ggKbase home page

L3_063_040G1_scaffold_136

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_040G1_scaffold_136_1
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..234)
DNA (234bp) protein (78aa)
rbr3A; reverse rubrerythrin-1 (EC:1.11.1.1)
Putative Rubredoxin/rubrerythrin n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F7R9_9CLOT
Putative Rubredoxin/rubrerythrin {ECO:0000313|EMBL:CDG01058.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
L3_063_040G1_scaffold_136_2
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

507..1835
DNA (1329bp) protein (443aa)
Amino acid permease-associated region n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JPQ0_CELLD
amino acid permease
Amino acid permease-associated region {ECO:0000313|EMBL:ADZ83710.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_063_040G1_scaffold_136_3
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1883..2245)
DNA (363bp) protein (121aa)
Putative Integral membrane protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EXT4_9CLOT
Putative Integral membrane protein {ECO:0000313|EMBL:CDG01056.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
L3_063_040G1_scaffold_136_4
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2670..3566
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HD83_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97320.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
traB family protein
L3_063_040G1_scaffold_136_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3874..6321
DNA (2448bp) protein (816aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049, ECO:0000313|EMBL:AIY84261.1}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049, ECO:0000313|EMBL:AIY84261.1};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
leuS; leucine--tRNA ligase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Clostridium sp. CAG:221 RepID=R6FYS1_9CLOT
L3_063_040G1_scaffold_136_6
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6419..7174)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6FYR9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB14171.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
ribosomal RNA adenine dimethylase family protein
L3_063_040G1_scaffold_136_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7383..7715
DNA (333bp) protein (111aa)
HesB-like selenoprotein n=1 Tax=Clostridium colicanis 209318 RepID=N9XZ93_9CLOT
HesB-like selenofamily protein
Fe-S cluster assembly protein HesB {ECO:0000313|EMBL:KJU72056.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_063_040G1_scaffold_136_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7761..8804)
DNA (1044bp) protein (348aa)
D-galactose-binding periplasmic protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M1Q7_CLOB8
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJU72345.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
periplasmic binding domain protein
L3_063_040G1_scaffold_136_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8832..9824)
DNA (993bp) protein (331aa)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Clostridium saccharoperbutylacetonicum RepID=M1MUQ8_9CLOT
periplasmic binding s and sugar binding domain of LacI family protein
Periplasmic binding s and sugar binding domain of LacI family protein {ECO:0000313|EMBL:AIY83606.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_063_040G1_scaffold_136_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9784..11568)
DNA (1785bp) protein (595aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CED5_9CLOT
HAMP domain protein
L3_063_040G1_scaffold_136_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11578..13176)
DNA (1599bp) protein (533aa)
Two component transcriptional regulator, AraC family n=1 Tax=Clostridium sp. DL-VIII RepID=G7LY61_9CLOT
helix-turn-helix domain protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:AIY83751.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_063_040G1_scaffold_136_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13340..13507)
DNA (168bp) protein (56aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83058.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_063_040G1_scaffold_136_13
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13516..14538)
DNA (1023bp) protein (341aa)
Galactoside transport system permease protein MglC n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QBU4_9CLOT
Galactoside transport system permease protein MglC {ECO:0000313|EMBL:EKY25411.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
branched-chain amino acid transport system / permease component family protein
L3_063_040G1_scaffold_136_14
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14555..16054)
DNA (1500bp) protein (500aa)
Galactose/methyl galactoside import ATP-binding protein MglA {ECO:0000256|HAMAP-Rule:MF_01717}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01717};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H414_9CLOT
ABC transporter family protein
L3_063_040G1_scaffold_136_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16143..17177)
DNA (1035bp) protein (345aa)
Putative ABC-type sugar transport system,periplasmic component n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FMU0_9CLOT
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJU72037.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
periplasmic binding s and sugar binding domain of LacI family protein
L3_063_040G1_scaffold_136_16
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17420..18076)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U5T3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ56447.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_063_040G1_scaffold_136_17
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18140..19486)
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BVT8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR20810.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
L3_063_040G1_scaffold_136_18
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19504..20580)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HH23_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98535.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
ATPase family protein
L3_063_040G1_scaffold_136_19
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20596..21375)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EIM5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJU72347.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
hypothetical protein
L3_063_040G1_scaffold_136_20
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21485..22279)
DNA (795bp) protein (265aa)
RelA/spoT family protein n=4 Tax=Clostridium butyricum RepID=B1QZ03_CLOBU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJZ86070.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
L3_063_040G1_scaffold_136_21
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22415..23089
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T999_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:AJH01674.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
hypothetical protein
L3_063_040G1_scaffold_136_22
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23165..24127
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WJG7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ03241.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
methyl-accepting chemotaxis sensory transducer
L3_063_040G1_scaffold_136_23
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24180..24866)
DNA (687bp) protein (229aa)
Ser/threonine protein phosphatase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G3P5_CLOPA
Ser/threonine protein phosphatase {ECO:0000313|EMBL:ETD70721.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
metallophosphoesterase
L3_063_040G1_scaffold_136_24
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24874..25137)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U407_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ55377.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
flagella-associated protein
L3_063_040G1_scaffold_136_25
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25202..27070)
DNA (1869bp) protein (623aa)
Putative uncharacterized protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UXI0_CLOBO
Uncharacterized protein {ECO:0000313|EMBL:KIL07963.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
hypothetical protein
L3_063_040G1_scaffold_136_26
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27199..27828
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3W1_9CLOT
Potassium transporter TrkA {ECO:0000313|EMBL:KJU72063.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
trkA-C domain protein
L3_063_040G1_scaffold_136_27
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27903..29123)
DNA (1221bp) protein (407aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=2 Tax=Clostridium botulinum B RepID=SYY_CLOBB
L3_063_040G1_scaffold_136_28
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29266..29676)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6FYQ9_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJU72065.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_063_040G1_scaffold_136_29
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30073..31152)
DNA (1080bp) protein (360aa)
histidine kinase n=1 Tax=Clostridium beijerinckii RepID=UPI0002E9A8B7
Histidine kinase {ECO:0000313|EMBL:ETD70728.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
diguanylate cyclase
L3_063_040G1_scaffold_136_30
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31287..32402)
DNA (1116bp) protein (372aa)
Ger(X)C family germination protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H6N8_9CLOT
Ger(X)C family germination protein {ECO:0000313|EMBL:EEH96888.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
spore germination protein
Displaying items 1-30 of 72 in total

View Taxonomy