ggKbase home page

L3_063_052G1_scaffold_12

Search features with annotation key words

Displaying items 1-30 of 277 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_052G1_scaffold_12_1
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..201)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VMP1_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:EQK42036.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
L3_063_052G1_scaffold_12_2
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(451..1869)
DNA (1419bp) protein (473aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
HAMP domain protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VU58_CLOBI
signal transduction histidine kinase
L3_063_052G1_scaffold_12_3
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1859..2533)
DNA (675bp) protein (225aa)
Transcriptional regulatory family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VTK9_CLOBI
Transcriptional regulator {ECO:0000313|EMBL:KGJ50728.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
ResD family transcriptional regulator
L3_063_052G1_scaffold_12_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2690..3967
DNA (1278bp) protein (426aa)
UPI0003D5B27B related cluster n=1 Tax=unknown RepID=UPI0003D5B27B
heavy metal-associated domain-containing protein
Heavy metal transport/detoxification protein {ECO:0000313|EMBL:ETI91241.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
L3_063_052G1_scaffold_12_5
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4024..4332)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W324_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:KGJ50729.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
L3_063_052G1_scaffold_12_6
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4500..4742
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2NTB1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGJ50730.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
hypothetical protein
L3_063_052G1_scaffold_12_7
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4884..5231)
DNA (348bp) protein (116aa)
Ferredoxin n=1 Tax=Clostridium sp. BL8 RepID=T0P7F6_9CLOT
Ferredoxin {ECO:0000313|EMBL:KGJ50731.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
hypothetical protein
L3_063_052G1_scaffold_12_8
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5473..5619
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W1A8_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:EQK47393.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
L3_063_052G1_scaffold_12_9
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5771..5911
DNA (141bp) protein (47aa)
YvrJ family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W1W2_CLOBI
YvrJ family protein {ECO:0000313|EMBL:EQK47380.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
hypothetical protein
L3_063_052G1_scaffold_12_10
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6278..6595)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4V7B7_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:KGJ50732.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
L3_063_052G1_scaffold_12_11
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6576..7331)
DNA (756bp) protein (252aa)
Uncharacterized protein {ECO:0000313|EMBL:KGJ50733.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
L3_063_052G1_scaffold_12_12
unknown

Not on your lists

comp(7476..8000)
DNA (525bp) protein (175aa)

This feature has no annotations

L3_063_052G1_scaffold_12_13
unknown

Not on your lists

comp(8095..8496)
DNA (402bp) protein (134aa)

This feature has no annotations

L3_063_052G1_scaffold_12_14
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8565..9677)
DNA (1113bp) protein (371aa)
bacteriocin ABC transporter n=1 Tax=Clostridium cellulovorans RepID=UPI0001E8EE2E
biotin/lipoyl attachment domain-containing protein
Biotin/lipoyl attachment domain-containing protein {ECO:0000313|EMBL:ADL51181.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
L3_063_052G1_scaffold_12_15
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9664..10161)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Clostridium botulinum CFSAN001627 RepID=M1ZWX5_CLOBO
Uncharacterized protein {ECO:0000313|EMBL:EKN41819.1}; TaxID=1232189 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum CFSAN001627.;"
hypothetical protein
L3_063_052G1_scaffold_12_16
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10148..12412)
DNA (2265bp) protein (755aa)
ABC-type bacteriocin transporter n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SSB4_CLOC7
ABC-type bacteriocin transporter {ECO:0000313|EMBL:ADL50511.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
bacteriocin ABC transporter
L3_063_052G1_scaffold_12_17
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12560..13894)
DNA (1335bp) protein (445aa)
two-component signal transduction sensor histidine kinase (EC:2.7.13.3)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4V7Q1_CLOBI
Sensor histidine kinase VirS {ECO:0000313|EMBL:CEP98534.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
L3_063_052G1_scaffold_12_18
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13891..14601)
DNA (711bp) protein (237aa)
Response regulator n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4V0D7_CLOBI
LytR family DNA-binding response regulator {ECO:0000313|EMBL:CEP41266.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
two-component signal transduction response regulator, LytTR family
L3_063_052G1_scaffold_12_19
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15288..15440)
DNA (153bp) protein (51aa)
IstB-like ATP binding family protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CJW0_CLOSO
DNA replication protein DnaC {ECO:0000313|EMBL:CEQ27405.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
L3_063_052G1_scaffold_12_20
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15628..16671
DNA (1044bp) protein (348aa)
ornithine cyclodeaminase (EC:4.3.1.12)
Ornithine cyclodeaminase n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VN06_CLOBI
Ornithine cyclodeaminase {ECO:0000313|EMBL:KGJ50734.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
L3_063_052G1_scaffold_12_21
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17093..17263
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0DZH7_CLOSO
Uncharacterised protein {ECO:0000313|EMBL:CEN75883.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
L3_063_052G1_scaffold_12_22
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17330..18100)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0DTG6_CLOSO
Uncharacterised protein {ECO:0000313|EMBL:CEQ30048.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
L3_063_052G1_scaffold_12_23
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18093..18575)
DNA (483bp) protein (161aa)
RNA polymerase sigma factor, sigma-70 family protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0DYN1_CLOSO
RNA polymerase sigma factor {ECO:0000313|EMBL:CEP80485.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
RNA polymerase, sigma-24 subunit, ECF subfamily
L3_063_052G1_scaffold_12_24
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19055..19627
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:470 RepID=R7FI38_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY82402.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_063_052G1_scaffold_12_25
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19721..20338)
DNA (618bp) protein (206aa)
IstB-like ATP binding family protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CJW0_CLOSO
DNA replication protein DnaC {ECO:0000313|EMBL:CEQ17882.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
L3_063_052G1_scaffold_12_26
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20331..21275)
DNA (945bp) protein (315aa)
DnaD domain protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CTR0_CLOSO
DnaA domain-containing protein {ECO:0000313|EMBL:CEN92959.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
DnaD domain protein
L3_063_052G1_scaffold_12_27
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21775..23058)
DNA (1284bp) protein (428aa)
FAD binding domain protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VNN4_CLOBI
FAD binding domain protein {ECO:0000313|EMBL:EQK45314.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
glucose-inhibited division protein A
L3_063_052G1_scaffold_12_28
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23089..24045)
DNA (957bp) protein (319aa)
2Fe-2S iron-sulfur cluster binding domain protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VMY6_CLOBI
2Fe-2S iron-sulfur cluster binding domain protein {ECO:0000313|EMBL:EQK42027.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
hypothetical protein
L3_063_052G1_scaffold_12_29
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24252..24923
DNA (672bp) protein (224aa)
Integral membrane family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VMN2_CLOBI
Integral membrane family protein {ECO:0000313|EMBL:EQK42026.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
membrane protein
L3_063_052G1_scaffold_12_30
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24929..25567)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VLL5_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:EQK42025.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
Displaying items 1-30 of 277 in total

View Taxonomy