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L3_063_052G1_scaffold_52

Search features with annotation key words

Displaying items 1-30 of 161 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_052G1_scaffold_52_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..577)
DNA (576bp) protein (192aa)
ABC transporter family protein n=26 Tax=Clostridium difficile RepID=T3GQF4_CLODC
ABC transporter ATP-binding protein
ABC transporter family protein {ECO:0000313|EMBL:EQH99567.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_063_052G1_scaffold_52_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

747..2105
DNA (1359bp) protein (453aa)
Putative membrane protein n=2 Tax=Clostridium difficile RepID=T4PM79_CLODI
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:EQH99568.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_063_052G1_scaffold_52_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2098..2730
DNA (633bp) protein (211aa)
OmpA family membrane protein n=174 Tax=Clostridium difficile RepID=T3GLN8_CLODC
putative membrane protein
OmpA family membrane protein {ECO:0000313|EMBL:EQH99569.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_063_052G1_scaffold_52_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3059..4216
DNA (1158bp) protein (386aa)
Metallo-beta-lactamase superfamily protein n=15 Tax=Clostridium difficile RepID=T2URV3_CLODI
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:CDS87165.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS87852.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative exported protein
L3_063_052G1_scaffold_52_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4363..4998)
DNA (636bp) protein (212aa)
lexA; Transcriptional regulator, LexA repressor (EC:3.4.21.88)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
LexA repressor n=90 Tax=Clostridium difficile RepID=LEXA_CLOD6
L3_063_052G1_scaffold_52_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5102..6229)
DNA (1128bp) protein (376aa)
Site-specific recombinase, phage integrase family n=198 Tax=Clostridium difficile RepID=G6BRZ1_CLODI
tyrosine recombinase
Putative phage integrase {ECO:0000313|EMBL:CCL30141.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_063_052G1_scaffold_52_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6551..7396)
DNA (846bp) protein (282aa)
Uncharacterized protein n=137 Tax=Clostridium difficile RepID=G6BRZ0_CLODI
hypothetical protein
Membrane protein {ECO:0000313|EMBL:CKH16665.1}; Putative membrane protein {ECO:0000313|EMBL:CEJ98505.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS87172.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_063_052G1_scaffold_52_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7426..7797)
DNA (372bp) protein (124aa)
Uncharacterized protein n=187 Tax=Clostridium difficile RepID=G6BRY9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQH99574.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
hypothetical protein
L3_063_052G1_scaffold_52_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7950..8210)
DNA (261bp) protein (87aa)
Stage V sporulation protein S n=214 Tax=Clostridium difficile RepID=C9XJG6_CLODC
spoVS; stage V sporulation protein S
Stage V sporulation protein S {ECO:0000313|EMBL:CCL22136.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_063_052G1_scaffold_52_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8399..9343)
DNA (945bp) protein (315aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=179 Tax=Clostridium difficile RepID=C9XJG7_CLODC
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
L3_063_052G1_scaffold_52_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9364..10218)
DNA (855bp) protein (285aa)
accD; Acetyl-CoA carboxylase subunit beta (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=134 Tax=Clostridium difficile RepID=ACCD_CLOD6
L3_063_052G1_scaffold_52_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10233..11594)
DNA (1362bp) protein (454aa)
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:EQH99578.1}; EC=6.3.4.14 {ECO:0000313|EMBL:EQH99578.1};; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Acetyl-CoA carboxylase, biotin carboxylase subunit n=199 Tax=Clostridium difficile RepID=C9XJG9_CLODC
accC; biotin carboxylase acetyl-CoA carboxylase subunit A
L3_063_052G1_scaffold_52_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11610..12062)
DNA (453bp) protein (151aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=210 Tax=Clostridium difficile RepID=C9XJH0_CLODC
accB; biotin carboxyl carrier protein of acetyl-CoA carboxylase
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:EHJ27276.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_063_052G1_scaffold_52_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12332..12778)
DNA (447bp) protein (149aa)
Uncharacterized protein n=194 Tax=Clostridium difficile RepID=G6BRY3_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL22141.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_063_052G1_scaffold_52_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13053..13331
DNA (279bp) protein (93aa)
Uncharacterized protein n=100 Tax=Clostridium difficile RepID=D5Q450_CLODI
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CCK98280.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_063_052G1_scaffold_52_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13460..14191)
DNA (732bp) protein (244aa)
Uncharacterized protein n=120 Tax=Clostridium difficile RepID=G6BRY1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQG76864.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
L3_063_052G1_scaffold_52_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14335..14979)
DNA (645bp) protein (215aa)
trmB; transfer RNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
tRNA (guanine-N(7)-)-methyltransferase n=195 Tax=Clostridium difficile RepID=TRMB_CLOD6
L3_063_052G1_scaffold_52_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15117..15437)
DNA (321bp) protein (107aa)
Iron-sulfur cluster biosynthesis family protein n=8 Tax=Clostridium difficile RepID=T2UTH9_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30154.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_063_052G1_scaffold_52_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15890..16138)
DNA (249bp) protein (83aa)
Glyoxalase-like domain protein n=2 Tax=Clostridium difficile RepID=T4PFZ6_CLODI
Glyoxalase-like domain protein {ECO:0000313|EMBL:EQI83896.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
hypothetical protein
L3_063_052G1_scaffold_52_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16169..16630)
DNA (462bp) protein (154aa)
Glyoxalase-like domain protein n=2 Tax=Clostridium difficile RepID=T4PM09_CLODI
glyoxalase
Putative enzyme {ECO:0000313|EMBL:CCL30156.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_063_052G1_scaffold_52_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16668..17501)
DNA (834bp) protein (278aa)
Transcriptional regulator, AraC family n=133 Tax=Clostridium difficile RepID=Q187Q4_CLOD6
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CCL22180.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_063_052G1_scaffold_52_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17775..18461)
DNA (687bp) protein (229aa)
ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=160 Tax=Clostridium difficile RepID=T3GPM3_CLODC
ABC transporter family protein {ECO:0000313|EMBL:EQH99586.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_063_052G1_scaffold_52_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18476..20890)
DNA (2415bp) protein (805aa)
FtsX-like permease family protein n=2 Tax=Clostridium difficile RepID=T4PM98_CLODI
ABC-type transport system, permease {ECO:0000313|EMBL:CDS87894.1}; Efflux ABC transporter, permease protein {ECO:0000313|EMBL:CDS87209.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC-type transport system, permease
L3_063_052G1_scaffold_52_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21172..22575)
DNA (1404bp) protein (468aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
His Kinase A domain protein n=2 Tax=Clostridium difficile RepID=T4PG02_CLODI
Two-component sensor histidine kinase
L3_063_052G1_scaffold_52_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23073..23933
DNA (861bp) protein (287aa)
Uncharacterized protein n=185 Tax=Clostridium difficile RepID=T3GL72_CLODC
putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EQH99589.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_063_052G1_scaffold_52_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24172..24771)
DNA (600bp) protein (200aa)
Acetyltransferase family protein n=112 Tax=Clostridium difficile RepID=T3GK04_CLODC
acetyltransferase
Putative acetyltransferase {ECO:0000313|EMBL:CBE04760.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_063_052G1_scaffold_52_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24919..25806)
DNA (888bp) protein (296aa)
LysR-family transcriptional regulator n=202 Tax=Clostridium difficile RepID=C9XJI3_CLODC
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CCL30164.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_063_052G1_scaffold_52_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25925..27124
DNA (1200bp) protein (400aa)
F420-0 gamma-glutamyl ligase {ECO:0000313|EMBL:CKH17206.1}; EC=6.3.2.31 {ECO:0000313|EMBL:CKH17206.1};; Uncharacterized protein {ECO:0000313|EMBL:CDS87220.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Gamma-glutamyl ligase family protein n=207 Tax=Clostridium difficile RepID=C9XJI4_CLODC
hypothetical protein
L3_063_052G1_scaffold_52_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27318..29873)
DNA (2556bp) protein (852aa)
FtsX-like permease family protein n=2 Tax=Clostridium difficile RepID=T4PM18_CLODI
ABC-type transport system, permease {ECO:0000313|EMBL:CDS87222.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC-type transport system, permease
L3_063_052G1_scaffold_52_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29870..30556)
DNA (687bp) protein (229aa)
ABC-type transport system, ATP-binding protein {ECO:0000313|EMBL:CCL30167.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCL30167.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
ABC transporter family protein n=109 Tax=Clostridium difficile RepID=C9XJI6_CLODC
ABC transporter ATP-binding protein
Displaying items 1-30 of 161 in total

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