ggKbase home page

L3_063_052G1_scaffold_62

Search features with annotation key words

Displaying items 1-30 of 141 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_052G1_scaffold_62_1
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2..661
DNA (660bp) protein (220aa)
Ser-Asp rich fibrinogen-binding,bone sialoprotein-binding protein n=1 Tax=Staphylococcus epidermidis AU12-03 RepID=K1UA37_STAEP
Clumping factor A {ECO:0000313|EMBL:AFH69099.1}; TaxID=1155084 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus 71193.;"
cell surface protein
L3_063_052G1_scaffold_62_2
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

687..1115
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VUY8_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:KGJ48179.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
L3_063_052G1_scaffold_62_3
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1223..1735)
DNA (513bp) protein (171aa)
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393};; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
superoxide dismutase (Cu-Zn) (EC:1.15.1.1)
Superoxide dismutase [Cu-Zn] n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VW52_CLOBI
L3_063_052G1_scaffold_62_4
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1900..3282)
DNA (1383bp) protein (461aa)
MATE efflux family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VIC5_CLOBI
MATE efflux family protein {ECO:0000313|EMBL:EQK41238.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
mate efflux family protein
L3_063_052G1_scaffold_62_5
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3295..3750)
DNA (456bp) protein (152aa)
MarR family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VW51_CLOBI
TrmB family transcriptional regulator {ECO:0000313|EMBL:KGJ48182.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
MarR-family transcriptional regulator
L3_063_052G1_scaffold_62_6
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3957..4406)
DNA (450bp) protein (150aa)
Spermine/spermidine acetyltransferase {ECO:0000313|EMBL:EQK44875.1}; EC=2.3.1.57 {ECO:0000313|EMBL:EQK44875.1};; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
spermine/spermidine acetyltransferase (EC:2.3.1.57)
Spermine/spermidine acetyltransferase n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VUS8_CLOBI
L3_063_052G1_scaffold_62_7
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4381..4911)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI0003652FBB
Acetyltransferase {ECO:0000313|EMBL:KGJ48186.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
acetyltransferase, GNAT family
L3_063_052G1_scaffold_62_8
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4912..5370)
DNA (459bp) protein (153aa)
Iron dependent repressor, N-terminal DNA binding domain protein n=1 Tax=Clostridium difficile CD69 RepID=T3ADV5_CLODI
MarR family transcriptional regulator {ECO:0000313|EMBL:KGJ48187.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
MarR family transcriptional regulator
L3_063_052G1_scaffold_62_9
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5579..6124)
DNA (546bp) protein (182aa)
AhpC/TSA family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VU43_CLOBI
AhpC/TSA family protein {ECO:0000313|EMBL:EQK44978.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
bcp; thiol peroxidase
L3_063_052G1_scaffold_62_10
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6139..6645)
DNA (507bp) protein (169aa)
CarD-like/TRCF domain protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VMT4_CLOBI
CarD family transcriptional regulator {ECO:0000313|EMBL:KGJ48189.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
Transcriptional regulator, CarD family
L3_063_052G1_scaffold_62_11
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6878..7750)
DNA (873bp) protein (291aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VU54_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:KGJ48190.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
sulfite/nitrite reductase
L3_063_052G1_scaffold_62_12
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7939..8370)
DNA (432bp) protein (144aa)
Putative membrane protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VKQ3_CLOBI
Putative membrane protein {ECO:0000313|EMBL:EQK41247.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
hypothetical protein
L3_063_052G1_scaffold_62_13
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8467..9534)
DNA (1068bp) protein (356aa)
Thiosulfate sulfurtransferase YnjE n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VID5_CLOBI
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
rhodanese domain-containing protein
L3_063_052G1_scaffold_62_14
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9863..10609
DNA (747bp) protein (249aa)
Rhamnosyl transferase family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VC08_CLOBI
Rhamnosyl transferase family protein {ECO:0000313|EMBL:EQK41249.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
hypothetical protein
L3_063_052G1_scaffold_62_15
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10720..11739)
DNA (1020bp) protein (340aa)
Na(+)/H(+) antiporter NhaA n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VJG1_CLOBI
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
nhaA; pH-dependent sodium/proton antiporter
L3_063_052G1_scaffold_62_16
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12220..14154
DNA (1935bp) protein (645aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VKE8_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:EQK41251.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
putative membrane protein
L3_063_052G1_scaffold_62_17
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14208..15401)
DNA (1194bp) protein (398aa)
Methionine gamma-lyase {ECO:0000313|EMBL:KGJ48195.1}; EC=4.4.1.11 {ECO:0000313|EMBL:KGJ48195.1};; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
mdeA2; methionine gamma-lyase MdeA (EC:4.4.1.11)
Methionine gamma-lyase n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VWE0_CLOBI
L3_063_052G1_scaffold_62_18
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15662..17233)
DNA (1572bp) protein (524aa)
Sensory box protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VTT8_CLOBI
Sensory box protein {ECO:0000313|EMBL:EQK44888.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
transcriptional regulator
L3_063_052G1_scaffold_62_19
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17254..18168)
DNA (915bp) protein (305aa)
Radical SAM superfamily protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VMN5_CLOBI
Radical SAM protein {ECO:0000313|EMBL:KGJ48197.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
hypothetical protein
L3_063_052G1_scaffold_62_20
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18264..18539)
DNA (276bp) protein (92aa)
Putative membrane protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VUU3_CLOBI
Putative membrane protein {ECO:0000313|EMBL:EQK44890.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
putative membrane protein
L3_063_052G1_scaffold_62_21
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18555..19985)
DNA (1431bp) protein (477aa)
Na+/H+ antiporter NhaC n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VKF2_CLOBI
Sodium:proton antiporter {ECO:0000313|EMBL:KGJ48198.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
putative Na+/H+ antiporter, NhaC family
L3_063_052G1_scaffold_62_22
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20325..21026)
DNA (702bp) protein (234aa)
B3/4 domain protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VKR5_CLOBI
B3/4 domain protein {ECO:0000313|EMBL:EQK41257.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
B3/4 domain protein
L3_063_052G1_scaffold_62_23
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21125..21964)
DNA (840bp) protein (280aa)
MerR regulatory family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VW06_CLOBI
MerR regulatory family protein {ECO:0000313|EMBL:EQK44897.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
MerR family transcriptional regulator
L3_063_052G1_scaffold_62_24
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22125..22805)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VUI0_CLOBI
putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EQK44446.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
L3_063_052G1_scaffold_62_25
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22909..23265
DNA (357bp) protein (119aa)
HTH-type transcriptional activator hxlR n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VKF5_CLOBI
HTH-type transcriptional activator hxlR {ECO:0000313|EMBL:EQK41261.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
HxlR family transcriptional regulator
L3_063_052G1_scaffold_62_26
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23319..24563)
DNA (1245bp) protein (415aa)
glutamate synthase (EC:1.4.1.13)
FAD binding domain protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VKS0_CLOBI
FAD binding domain protein {ECO:0000313|EMBL:EQK41262.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
L3_063_052G1_scaffold_62_27
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24731..25897)
DNA (1167bp) protein (389aa)
adh1; NADPH-dependent butanol dehydrogenase (EC:1.1.1.-)
Iron-containing alcohol dehydrogenase family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VIE9_CLOBI
Iron-containing alcohol dehydrogenase family protein {ECO:0000313|EMBL:EQK41263.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
L3_063_052G1_scaffold_62_28
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26178..28736)
DNA (2559bp) protein (853aa)
2Fe-2S iron-sulfur cluster binding domain protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VC19_CLOBI
2Fe-2S iron-sulfur cluster binding domain protein {ECO:0000313|EMBL:EQK41264.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
xdhA3; xanthine dehydrogenase, molybdenum binding and iron-sulfur binding subunits
L3_063_052G1_scaffold_62_29
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28747..30120)
DNA (1374bp) protein (458aa)
Dihydropyrimidinase n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VJH3_CLOBI
Phenylhydantoinase {ECO:0000313|EMBL:KGJ48207.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
D-hydantoinase
L3_063_052G1_scaffold_62_30
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30136..31239)
DNA (1104bp) protein (368aa)
Dihydroorotate dehydrogenase family domain protein {ECO:0000313|EMBL:EQK41266.1}; EC=1.3.-.- {ECO:0000313|EMBL:EQK41266.1};; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
Dihydroorotate dehydrogenase family domain protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VKF9_CLOBI
dihydroorotate dehydrogenase, catalytic subunit
Displaying items 1-30 of 141 in total

View Taxonomy