ggKbase home page

L3_063_052G1_scaffold_70

Search features with annotation key words

Displaying items 1-30 of 129 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_052G1_scaffold_70_1
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..550)
DNA (549bp) protein (183aa)
NMT1-like family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W0H2_CLOBI
NMT1-like family protein {ECO:0000313|EMBL:EQK46880.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
hypothetical protein
L3_063_052G1_scaffold_70_2
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(640..1443)
DNA (804bp) protein (268aa)
Binding--dependent transport system inner membrane component family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W0A8_CLOBI
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:EQK47038.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
ABC transporter permease
L3_063_052G1_scaffold_70_3
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1430..2182)
DNA (753bp) protein (251aa)
ABC transporter family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VLW8_CLOBI
ABC transporter family protein {ECO:0000313|EMBL:EQK42503.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
ABC transporter ATP-binding protein
L3_063_052G1_scaffold_70_4
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2477..3448
DNA (972bp) protein (324aa)
Xylose isomerase-like TIM barrel family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VFJ8_CLOBI
Xylose isomerase-like TIM barrel family protein {ECO:0000313|EMBL:EQK42504.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
Xylose isomerase domain protein TIM barrel
L3_063_052G1_scaffold_70_5
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3738..5477
DNA (1740bp) protein (580aa)
ABC transporter family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VTN6_CLOBI
ABC transporter family protein {ECO:0000313|EMBL:EQK47089.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
ABC transporter
L3_063_052G1_scaffold_70_6
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5696..8968
DNA (3273bp) protein (1091aa)
Type I site-specific deoxyribonuclease {ECO:0000313|EMBL:CEP80513.1}; EC=3.1.21.3 {ECO:0000313|EMBL:CEP80513.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
type I restriction endonuclease EcoKI subunit R n=1 Tax=Clostridium botulinum RepID=UPI00036FC077
type III restriction protein res subunit
L3_063_052G1_scaffold_70_7
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9083..10498
DNA (1416bp) protein (472aa)
Adenine-specific DNA-methyltransferase {ECO:0000313|EMBL:CEP80516.1}; EC=2.1.1.72 {ECO:0000313|EMBL:CEP80516.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
adenine-specific DNA-methyltransferase (EC:2.1.1.72)
N-6 DNA methylase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP56_9CLOT
L3_063_052G1_scaffold_70_8
Clostridium sp. K25, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10500..11831
DNA (1332bp) protein (444aa)
Putative uncharacterized protein n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3K4I2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KEI08619.1}; TaxID=1443109 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. K25.;"
type I restriction enzyme StySJI specificity protein
L3_063_052G1_scaffold_70_9
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12056..13384
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LY62_CLOB8
Uncharacterized protein {ECO:0000313|EMBL:AIY79563.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
hypothetical protein
L3_063_052G1_scaffold_70_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13362..14345
DNA (984bp) protein (328aa)
Uncharacterized protein {ECO:0000313|EMBL:AIY81169.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L3_063_052G1_scaffold_70_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14349..15143
DNA (795bp) protein (265aa)
Uncharacterized protein {ECO:0000313|EMBL:AIY81422.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L3_063_052G1_scaffold_70_12
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15326..18136
DNA (2811bp) protein (937aa)
DNA repair helicase n=1 Tax=[Clostridium] glycolicum RepID=UPI0003762A3C
Helicase C-terminal domain protein {ECO:0000313|EMBL:EDQ97741.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
Protein of unknown function DUF3427
L3_063_052G1_scaffold_70_13
Bacillus weihenstephanensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18308..20671
DNA (2364bp) protein (788aa)
hypothetical protein n=1 Tax=Clostridium botulinum RepID=UPI000379B197
Uncharacterized protein {ECO:0000313|EMBL:ETT79901.1}; TaxID=1227358 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus weihenstephanensis FSL H7-687.;"
hypothetical protein
L3_063_052G1_scaffold_70_14
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20676..21938
DNA (1263bp) protein (421aa)
hypothetical protein n=1 Tax=Clostridium botulinum RepID=UPI00037D7C47
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK60673.1}; TaxID=386415 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi (strain NT).;"
L3_063_052G1_scaffold_70_15
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22057..22449)
DNA (393bp) protein (131aa)
NUDIX hydrolase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP88_9CLOT
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:AKA69332.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L3_063_052G1_scaffold_70_16
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22604..24424
DNA (1821bp) protein (607aa)
Putative uncharacterized protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TSG4_ALKMQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR49132.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
L3_063_052G1_scaffold_70_17
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24584..26182)
DNA (1599bp) protein (533aa)
Peptide chain release factor 3 n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W1B7_CLOBI
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
prfC; peptide chain release factor 3
L3_063_052G1_scaffold_70_18
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26454..27122
DNA (669bp) protein (223aa)
Flagellin N-methylase family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VTM5_CLOBI
Flagellin N-methylase family protein {ECO:0000313|EMBL:EQK47074.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
hypothetical protein
L3_063_052G1_scaffold_70_19
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27324..28103
DNA (780bp) protein (260aa)
Calcineurin-like phosphoesterase family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W288_CLOBI
Calcineurin-like phosphoesterase family protein {ECO:0000313|EMBL:EQK47176.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
metallophosphoesterase
L3_063_052G1_scaffold_70_20
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28201..28908
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VPB8_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:EQK42512.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
hypothetical protein
L3_063_052G1_scaffold_70_21
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28978..29625)
DNA (648bp) protein (216aa)
nitrite and sulfite reductase 4Fe-4S region (EC:1.7.1.4)
Nitrite/Sulfite reductase ferredoxin-like half domain protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W2M8_CLOBI
Nitrite/Sulfite reductase ferredoxin-like half domain protein {ECO:0000313|EMBL:EQK47172.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
L3_063_052G1_scaffold_70_22
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29747..30166
DNA (420bp) protein (140aa)
MarR family protein n=2 Tax=Clostridium bifermentans RepID=T4VFK9_CLOBI
MarR family protein {ECO:0000313|EMBL:EQK42514.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
MarR family regulatory protein
L3_063_052G1_scaffold_70_23
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30247..30642
DNA (396bp) protein (132aa)
Putative membrane protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W0K8_CLOBI
Putative membrane protein {ECO:0000313|EMBL:EQK46925.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
hypothetical protein
L3_063_052G1_scaffold_70_24
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30709..32373
DNA (1665bp) protein (555aa)
Bacterial extracellular solute-binding s, 5 Middle family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W1Z6_CLOBI
Bacterial extracellular solute-binding s, 5 Middle family protein {ECO:0000313|EMBL:EQK47076.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
family 5 extracellular solute-binding protein
L3_063_052G1_scaffold_70_25
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32424..32732)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W1P8_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:EQK46867.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
L3_063_052G1_scaffold_70_26
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32766..33320)
DNA (555bp) protein (185aa)
Bacterial regulatory s, tetR family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VLY3_CLOBI
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:EQK42518.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
TetR/AcrR family transcriptional regulator, acrAB operon repressor
L3_063_052G1_scaffold_70_27
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33594..34442
DNA (849bp) protein (283aa)
EDD, DegV family domain protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VTF9_CLOBI
6-phosphogluconate dehydratase {ECO:0000313|EMBL:KGJ49933.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
hypothetical protein
L3_063_052G1_scaffold_70_28
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34519..37521
DNA (3003bp) protein (1001aa)
DEAD/DEAH box helicase family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VN04_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:KGJ49932.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
putative helicase, DinG family
L3_063_052G1_scaffold_70_29
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37595..38335)
DNA (741bp) protein (247aa)
Tyrosine phosphatase family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VP33_CLOBI
Protein tyrosine phosphatase {ECO:0000313|EMBL:KGJ49931.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
hypothetical protein
L3_063_052G1_scaffold_70_30
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38491..38856
DNA (366bp) protein (122aa)
Bacterial regulatory , arsR family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VPC8_CLOBI
ArsR family transcriptional regulator {ECO:0000313|EMBL:KGJ49930.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
ArsR family transcriptional regulator
Displaying items 1-30 of 129 in total

View Taxonomy