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L3_063_052G1_scaffold_96

Search features with annotation key words

Displaying items 1-30 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_052G1_scaffold_96_1
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(145..906)
DNA (762bp) protein (254aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1SAC4_9BIFI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:ETO96515.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_063_052G1_scaffold_96_2
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1075..1818
DNA (744bp) protein (248aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0QAL7_9BIFI
response regulator-like transcriptional regulatory protein
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:ETO96533.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_063_052G1_scaffold_96_3
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1867..2532
DNA (666bp) protein (222aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III n=2 Tax=Bifidobacterium dentium RepID=D2Q6K8_BIFDB
L3_063_052G1_scaffold_96_4
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2585..4129
DNA (1545bp) protein (515aa)
ABC transporter, substrate-binding protein, family 5 n=2 Tax=Bifidobacterium dentium RepID=E0QAL5_9BIFI
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:ETO96514.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
peptides ABC transporter substrate-binding protein
L3_063_052G1_scaffold_96_5
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


4211..7000
DNA (2790bp) protein (930aa)
Valine--tRNA ligase {ECO:0000256|SAAS:SAAS00105779}; EC=6.1.1.9 {ECO:0000256|SAAS:SAAS00105779};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
valS; valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0QAL4_9BIFI
L3_063_052G1_scaffold_96_6
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7058..9121)
DNA (2064bp) protein (688aa)
Uncharacterized protein n=3 Tax=Bifidobacterium dentium RepID=E0QAL3_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ETO96519.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_063_052G1_scaffold_96_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9223..9636)
DNA (414bp) protein (138aa)
tyrA; chorismate mutase TyrA (EC:5.4.99.5)
Chorismate mutase {ECO:0000313|EMBL:EFM40360.1}; EC=5.4.99.5 {ECO:0000313|EMBL:EFM40360.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Chorismate mutase TyrA n=4 Tax=Bifidobacterium dentium RepID=D2Q6L3_BIFDB
L3_063_052G1_scaffold_96_8
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9653..10129)
DNA (477bp) protein (159aa)
Transcriptional regulator, AsnC family n=2 Tax=Bifidobacterium dentium RepID=D2Q6L4_BIFDB
AsnC family transcriptional regulator
Winged helix-turn-helix DNA-binding protein {ECO:0000313|EMBL:ETO96525.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_063_052G1_scaffold_96_9
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10562..12583)
DNA (2022bp) protein (674aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Transcription termination factor Rho n=3 Tax=Bifidobacterium dentium RepID=E0QAL0_9BIFI
rho; transcription termination factor Rho
L3_063_052G1_scaffold_96_10
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12844..14433)
DNA (1590bp) protein (530aa)
Flavin containing amine oxidoreductase n=4 Tax=Bifidobacterium dentium RepID=D2Q6L6_BIFDB
Flavin containing amine oxidoreductase {ECO:0000313|EMBL:ADB10557.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
flavin containing amine oxidoreductase
L3_063_052G1_scaffold_96_11
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14637..16568)
DNA (1932bp) protein (644aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2Q6L7_BIFDB
hypothetical protein
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27863.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L3_063_052G1_scaffold_96_12
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16730..17044)
DNA (315bp) protein (105aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=E1NAF4_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETY72359.1}; TaxID=1435051 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium moukalabense DSM 27321.;"
L3_063_052G1_scaffold_96_13
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17044..18117)
DNA (1074bp) protein (358aa)
acetyltransferase (EC:2.3.1.57)
Acetyltransferase (GNAT) family {ECO:0000313|EMBL:ADB10560.1}; EC=2.3.1.57 {ECO:0000313|EMBL:ADB10560.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
Acetyltransferase, GNAT family n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1SAB1_9BIFI
L3_063_052G1_scaffold_96_14
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18362..19858)
DNA (1497bp) protein (499aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
gatB; aspartyl/glutamyl-tRNA(Gln) amidotransferase subunit B (EC:6.1.1.18)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=2 Tax=Bifidobacterium dentium RepID=E0QAK5_9BIFI
L3_063_052G1_scaffold_96_15
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19884..21419)
DNA (1536bp) protein (512aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
gatA; aspartyl/glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=2 Tax=Bifidobacterium dentium RepID=E0QAK4_9BIFI
L3_063_052G1_scaffold_96_16
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21421..21717)
DNA (297bp) protein (99aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=3 Tax=Bifidobacterium dentium RepID=B1SAA8_9BIFI
glutamyl-tRNA amidotransferase
L3_063_052G1_scaffold_96_17
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22243..22860)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A4I1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37980.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L3_063_052G1_scaffold_96_18
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(22902..23348)
DNA (447bp) protein (149aa)
DNA methylase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6N0H0_9FIRM
DNA methylase {ECO:0000313|EMBL:CDB99851.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
DNA methylase N-4/N-6 domain-containing protein
L3_063_052G1_scaffold_96_19
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23427..24302
DNA (876bp) protein (292aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0QAK2_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM40350.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L3_063_052G1_scaffold_96_20
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24344..25306)
DNA (963bp) protein (321aa)
tRNA/rRNA methyltransferase (EC:2.1.1.34)
tRNA/rRNA methyltransferase {ECO:0000313|EMBL:ADB10565.1}; EC=2.1.1.34 {ECO:0000313|EMBL:ADB10565.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
tRNA/rRNA methyltransferase n=2 Tax=Bifidobacterium dentium RepID=D2Q6M4_BIFDB
L3_063_052G1_scaffold_96_21
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25395..26057)
DNA (663bp) protein (221aa)
pyrE; orotate phosphoribosyltransferase PyrE (EC:2.4.2.10)
Orotate phosphoribosyltransferase family protein n=2 Tax=Bifidobacterium dentium RepID=E0QAK0_9BIFI
Orotate phosphoribosyltransferase family protein {ECO:0000313|EMBL:ETO96517.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_063_052G1_scaffold_96_22
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26083..27426)
DNA (1344bp) protein (448aa)
DNA recombination protein rmuC-like protein n=2 Tax=Bifidobacterium dentium RepID=D2Q6M6_BIFDB
DNA recombination protein rmuC-like protein
DNA recombination protein rmuC-like protein {ECO:0000313|EMBL:ADB10567.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L3_063_052G1_scaffold_96_23
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27584..28573
DNA (990bp) protein (330aa)
ActP copper transport ATPase n=2 Tax=Bifidobacterium dentium RepID=D2Q6M7_BIFDB
actP; actP copper transport ATPase
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27873.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L3_063_052G1_scaffold_96_24
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28660..31413)
DNA (2754bp) protein (918aa)
clpB; ATP-dependent chaperone ClpB (EC:3.6.4.3)
ATP-dependent chaperone protein ClpB n=2 Tax=Bifidobacterium dentium RepID=E0QAJ7_9BIFI
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L3_063_052G1_scaffold_96_25
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31567..32388)
DNA (822bp) protein (274aa)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC:5.3.3.10)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase n=2 Tax=Bifidobacterium dentium RepID=D2Q6M9_BIFDB
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27875.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L3_063_052G1_scaffold_96_26
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32409..32933)
DNA (525bp) protein (175aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0QAJ5_9BIFI
hypothetical protein
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27876.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L3_063_052G1_scaffold_96_27
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33393..34997)
DNA (1605bp) protein (535aa)
LPXTG-motif cell wall anchor domain protein n=2 Tax=Bifidobacterium dentium RepID=E0QAJ3_9BIFI
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EFM40341.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
fimbrial subunit
L3_063_052G1_scaffold_96_28
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35146..38226)
DNA (3081bp) protein (1027aa)
von Willebrand factor type A domain protein n=2 Tax=Bifidobacterium dentium RepID=E0QAJ2_9BIFI
von Willebrand factor type A domain protein {ECO:0000313|EMBL:EFM40340.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L3_063_052G1_scaffold_96_29
unknown

Not on your lists

comp(38405..38536)
DNA (132bp) protein (44aa)

This feature has no annotations

L3_063_052G1_scaffold_96_30
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38508..39542)
DNA (1035bp) protein (345aa)
Sortase n=2 Tax=Bifidobacterium dentium RepID=D2Q6N3_BIFDB
sortase
Sortase {ECO:0000313|EMBL:ADB10574.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
Displaying items 1-30 of 92 in total

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