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L3_063_052G1_scaffold_216

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_052G1_scaffold_216_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..215
DNA (213bp) protein (71aa)
Reverse rubrerythrin-1 {ECO:0000313|EMBL:EQF25483.1}; EC=1.11.1.1 {ECO:0000313|EMBL:EQF25483.1};; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
Reverse rubrerythrin-1 n=5 Tax=Clostridium difficile RepID=T2XJI9_CLODI
rubrerythrin
L3_063_052G1_scaffold_216_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

315..1463
DNA (1149bp) protein (383aa)
4Fe-4S binding domain protein n=97 Tax=Clostridium difficile RepID=T3H9W3_CLODC
iron-sulfur protein
4Fe-4S binding domain protein {ECO:0000313|EMBL:EQI00356.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_063_052G1_scaffold_216_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1516..2781
DNA (1266bp) protein (422aa)
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Dihydroorotase n=135 Tax=Clostridium difficile RepID=C9XPR6_CLODC
L3_063_052G1_scaffold_216_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3067..4299)
DNA (1233bp) protein (411aa)
FtsX-like permease family protein n=64 Tax=Clostridium difficile RepID=T2U3T3_CLODI
FtsX-like permease family protein {ECO:0000313|EMBL:EQG76298.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
ABC transporter permease
L3_063_052G1_scaffold_216_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4302..4976)
DNA (675bp) protein (225aa)
ABC-type transport system, ATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=197 Tax=Clostridium difficile RepID=T3HDJ2_CLODC
ABC transporter family protein {ECO:0000313|EMBL:EQG75584.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_063_052G1_scaffold_216_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4984..6213)
DNA (1230bp) protein (410aa)
ABC-type transport system, permease n=171 Tax=Clostridium difficile RepID=Q18C49_CLOD6
ABC transporter permease
HlyD secretion family protein {ECO:0000313|EMBL:EQE66200.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_063_052G1_scaffold_216_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6325..7329)
DNA (1005bp) protein (335aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=2 Tax=Clostridium difficile RepID=T4PIP8_CLODI
Two-component sensor histidine kinase
L3_063_052G1_scaffold_216_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7353..8027)
DNA (675bp) protein (225aa)
Transcriptional regulatory family protein n=179 Tax=Clostridium difficile RepID=C9XPY5_CLODC
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CEJ98121.1}; Two-component response regulator controlling resistance to antibiotics affecting the envelope (YtsB) {ECO:0000313|EMBL:CDS86625.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_063_052G1_scaffold_216_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8315..9082
DNA (768bp) protein (256aa)
ABC-type transport system, ATP-binding protein (EC:3.6.3.-)
ABC-type transport system, ATP-binding protein {ECO:0000313|EMBL:CCL21658.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCL21658.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ABC transporter family protein n=167 Tax=Clostridium difficile RepID=T3HB59_CLODC
L3_063_052G1_scaffold_216_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9069..11006
DNA (1938bp) protein (646aa)
FtsX-like permease family protein n=2 Tax=Clostridium difficile RepID=T4PQP9_CLODI
ABC-type transport system, permease {ECO:0000313|EMBL:CCL21659.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ABC-type transport system, permease
L3_063_052G1_scaffold_216_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11231..12844
DNA (1614bp) protein (538aa)
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:CCL29683.1}; EC=2.3.2.2 {ECO:0000313|EMBL:CCL29683.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Gamma-glutamyltransferase n=19 Tax=Clostridium difficile RepID=T2YYL0_CLODI
putative gamma-glutamyltranspeptidase
L3_063_052G1_scaffold_216_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12977..13828)
DNA (852bp) protein (284aa)
3-mercaptopyruvate sulfurtransferase {ECO:0000313|EMBL:CDT22504.1}; EC=2.8.1.2 {ECO:0000313|EMBL:CDT22504.1};; Putative 3-mercaptopyruvate sulfurtransferase {ECO:0000313|EMBL:CDS86634.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Rhodanese-like domain protein n=2 Tax=Clostridium difficile RepID=T4PIQ1_CLODI
3-mercaptopyruvate sulfurtransferase
L3_063_052G1_scaffold_216_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14454..15347
DNA (894bp) protein (298aa)
Ferredoxin--NADP(+) reductase subunit alpha (EC:1.18.1.2)
Oxidoreductase NAD-binding domain protein n=189 Tax=Clostridium difficile RepID=T3HD27_CLODC
Oxidoreductase NAD-binding domain protein {ECO:0000313|EMBL:EQE66133.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_063_052G1_scaffold_216_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15347..16741
DNA (1395bp) protein (465aa)
aspB1; putative glutamate synthase (EC:1.4.1.13)
Glutamate synthase (NADPH), homotetrameric {ECO:0000313|EMBL:EQI00368.1}; EC=1.4.1.13 {ECO:0000313|EMBL:EQI00368.1};; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Glutamate synthase (NADPH), homotetrameric n=194 Tax=Clostridium difficile RepID=T3HAU7_CLODC
L3_063_052G1_scaffold_216_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17107..19326
DNA (2220bp) protein (740aa)
Diguanylate cyclase domain protein n=12 Tax=Clostridium difficile RepID=T4MG06_CLODI
signaling protein
Putative signaling protein {ECO:0000313|EMBL:CCL29687.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_063_052G1_scaffold_216_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19404..20219
DNA (816bp) protein (272aa)
ABC transporter family protein n=29 Tax=Clostridium difficile RepID=T2U6B0_CLODI
ABC transporter family protein {ECO:0000313|EMBL:EQI00370.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
ABC transporter ATP-binding protein
L3_063_052G1_scaffold_216_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20219..22099
DNA (1881bp) protein (627aa)
FtsX-like permease family protein n=2 Tax=Clostridium difficile RepID=T4ZHB7_CLODI
FtsX-like permease family protein {ECO:0000313|EMBL:EQI85199.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
ABC transporter permease
L3_063_052G1_scaffold_216_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22218..23609
DNA (1392bp) protein (464aa)
MATE efflux family protein n=184 Tax=Clostridium difficile RepID=C9XQC0_CLODC
drug/sodium antiporter
Putative drug/sodium antiporter, MATE family {ECO:0000313|EMBL:CCL29690.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_063_052G1_scaffold_216_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23716..24756
DNA (1041bp) protein (347aa)
Uncharacterized protein n=72 Tax=Clostridium difficile RepID=C9XQC1_CLODC
hypothetical protein
Fic family protein {ECO:0000313|EMBL:EHJ27660.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_063_052G1_scaffold_216_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25245..25898
DNA (654bp) protein (218aa)
FMN-dependent NADH-azoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000256|HAMAP-Rule:MF_01216};; Azo-dye reductase {ECO:0000256|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
FMN-dependent NADH-azoreductase n=9 Tax=Clostridium difficile RepID=D5Q6M9_CLODI
putative FMN-dependent NADH-azoreductase
L3_063_052G1_scaffold_216_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25974..26183
DNA (210bp) protein (70aa)
Uncharacterized protein n=112 Tax=Clostridium difficile RepID=C9XQC3_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ27662.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_063_052G1_scaffold_216_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26323..26889)
DNA (567bp) protein (189aa)
Uncharacterized protein n=112 Tax=Clostridium difficile RepID=T2TLJ6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL21671.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_063_052G1_scaffold_216_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27050..27703
DNA (654bp) protein (218aa)
Channel , hemolysin III family protein n=186 Tax=Clostridium difficile RepID=C9XQC5_CLODC
hemolysin-like membrane protein
Channel , hemolysin III family protein {ECO:0000313|EMBL:EQI00377.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_063_052G1_scaffold_216_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27861..28037)
DNA (177bp) protein (59aa)
Uncharacterized protein n=83 Tax=Clostridium difficile RepID=F3Y632_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG76289.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_063_052G1_scaffold_216_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28565..29509
DNA (945bp) protein (315aa)
hisZ; ATP phosphoribosyltransferase regulatorysubunit (EC:6.1.1.21)
ATP phosphoribosyltransferase regulatory subunit {ECO:0000313|EMBL:CAJ68412.1}; EC=6.1.1.21 {ECO:0000313|EMBL:CAJ68412.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Histidyl-tRNA synthetase family protein n=27 Tax=Clostridium difficile RepID=T3HAB0_CLODC
L3_063_052G1_scaffold_216_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29531..30157
DNA (627bp) protein (209aa)
hisG; ATP phosphoribosyltransferase (ATP-PRTase)(ATP-PRT) (EC:2.4.2.17)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00008790}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_01018};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00046302};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
ATP phosphoribosyltransferase n=197 Tax=Clostridium difficile RepID=HIS1_CLOD6
L3_063_052G1_scaffold_216_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30191..31240
DNA (1050bp) protein (350aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Histidinol-phosphate aminotransferase n=9 Tax=Clostridium difficile RepID=T2VZC5_CLODI
histidinol-phosphate aminotransferase
L3_063_052G1_scaffold_216_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31243..31821
DNA (579bp) protein (193aa)
hisB; Imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Imidazoleglycerol-phosphate dehydratase n=187 Tax=Clostridium difficile RepID=HIS7_CLOD6
L3_063_052G1_scaffold_216_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31823..32428
DNA (606bp) protein (202aa)
hisH; Imidazole glycerol phosphate synthase subunitHisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Imidazole glycerol phosphate synthase subunit HisH n=2 Tax=Clostridium difficile RepID=T4PIR1_CLODI
L3_063_052G1_scaffold_216_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32425..33147
DNA (723bp) protein (241aa)
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)m ethylideneamino]imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=2 Tax=Clostridium difficile RepID=T4PPM3_CLODI
Displaying items 1-30 of 54 in total

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