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L3_063_052G1_scaffold_371

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_052G1_scaffold_371_1
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..130
DNA (129bp) protein (43aa)
Translation initiation factor IF-2 n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZL2_ESCHE
infB; translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
L3_063_052G1_scaffold_371_2
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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198..599
DNA (402bp) protein (134aa)
Ribosome-binding factor A (Fragment) n=1 Tax=Salmonella enterica subsp. enterica serovar Adelaide str. A4-669 RepID=G5LEL7_SALET
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|SAAS:SAAS00023386}; Flags: Fragment;; TaxID=913063 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Adelaide str. A4-669.;"
L3_063_052G1_scaffold_371_3
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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599..1543
DNA (945bp) protein (315aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
tRNA pseudouridine synthase B n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZL4_ESCHE
tRNA pseudouridine synthase B
L3_063_052G1_scaffold_371_4
Buttiauxella agrestis, Buttiauxella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1683..1952
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=3 Tax=Enterobacteriaceae RepID=D2ZKW5_9ENTR
30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1006004 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buttiauxella.;" source="Buttiauxella agrestis ATCC 33320.;"
L3_063_052G1_scaffold_371_5
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2261..4342
DNA (2082bp) protein (694aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZL6_ESCHE
polynucleotide phosphorylase/polyadenylase
L3_063_052G1_scaffold_371_6
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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4459..5343
DNA (885bp) protein (295aa)
Lipoprotein NlpI n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZL7_ESCHE
Lipoprotein NlpI {ECO:0000256|PIRNR:PIRNR004654}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
lipoprotein NlpI
L3_063_052G1_scaffold_371_7
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5523..7466
DNA (1944bp) protein (648aa)
ATP-dependent RNA helicase DeaD {ECO:0000256|HAMAP-Rule:MF_00964}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00964};; Cold-shock DEAD box protein A {ECO:0000256|HAMAP-Rule:MF_00964}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
ATP-dependent RNA helicase DeaD n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZL8_ESCHE
ATP-dependent RNA helicase DeaD
L3_063_052G1_scaffold_371_8
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7616..8860
DNA (1245bp) protein (415aa)
Tryptophan transporter n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZL9_ESCHE
Tryptophan transporter {ECO:0000313|EMBL:GAB51177.1}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
tryptophan permease
L3_063_052G1_scaffold_371_9
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8891..9895)
DNA (1005bp) protein (335aa)
Putative uncharacterized protein yhbW n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZM0_ESCHE
Putative uncharacterized protein yhbW {ECO:0000313|EMBL:GAB51178.1}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
yhbW; hypothetical protein
L3_063_052G1_scaffold_371_10
Enterobacter aerogenes, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10023..10901)
DNA (879bp) protein (293aa)
peptidase, U32 family (EC:3.4.-.-)
Putative uncharacterized protein yhbV n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZM1_ESCHE
Enterobacter aerogenes strain DDE1 c8, whole genome shotgun sequence {ECO:0000313|EMBL:KIU33040.1}; TaxID=548 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter aerogenes (Aerobacter aerogenes).;"
L3_063_052G1_scaffold_371_11
Enterobacter aerogenes, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10912..11907)
DNA (996bp) protein (332aa)
Putative protease YhbU n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZM2_ESCHE
Enterobacter aerogenes strain DDE1 c8, whole genome shotgun sequence {ECO:0000313|EMBL:KIU33039.1}; TaxID=548 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter aerogenes (Aerobacter aerogenes).;"
protease
L3_063_052G1_scaffold_371_12
Enterobacter aerogenes, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12135..12659
DNA (525bp) protein (175aa)
Putative uncharacterized protein yhbT n=2 Tax=Bacteria RepID=H5UZM3_ESCHE
Enterobacter aerogenes strain DDE1 c8, whole genome shotgun sequence {ECO:0000313|EMBL:KIU33038.1}; TaxID=548 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter aerogenes (Aerobacter aerogenes).;"
hypothetical protein
L3_063_052G1_scaffold_371_13
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12653..13156
DNA (504bp) protein (168aa)
Putative N-acetyltransferase YhbS n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZM4_ESCHE
Putative N-acetyltransferase YhbS {ECO:0000313|EMBL:GAB51182.1}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
Acetyl transferase
L3_063_052G1_scaffold_371_14
Enterobacter aerogenes, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13143..13445)
DNA (303bp) protein (101aa)
UPF0213 protein YhbQ n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZM5_ESCHE
UPF0213 protein SR38_12850 {ECO:0000256|HAMAP-Rule:MF_01029}; TaxID=548 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter aerogenes (Aerobacter aerogenes).;"
GIY-YIG nuclease superfamily protein
L3_063_052G1_scaffold_371_15
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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13541..13963
DNA (423bp) protein (141aa)
UPF0306 protein YhbP n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZM6_ESCHE
UPF0306 protein YhbP {ECO:0000256|HAMAP-Rule:MF_00764}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
hypothetical protein
L3_063_052G1_scaffold_371_16
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13967..14485)
DNA (519bp) protein (173aa)
Putative uncharacterized protein yhbO n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZM7_ESCHE
Putative uncharacterized protein yhbO {ECO:0000313|EMBL:GAB51185.1}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
hypothetical protein
L3_063_052G1_scaffold_371_17
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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14603..15250
DNA (648bp) protein (216aa)
Putative uncharacterized protein yraR n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZM8_ESCHE
Putative uncharacterized protein yraR {ECO:0000313|EMBL:GAB51186.1}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
yraR; nucleoside-diphosphate-sugar epimerase
L3_063_052G1_scaffold_371_18
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15287..15862)
DNA (576bp) protein (192aa)
Putative uncharacterized protein yraP n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZM9_ESCHE
Putative uncharacterized protein yraP {ECO:0000313|EMBL:GAB51187.1}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
hypothetical protein
L3_063_052G1_scaffold_371_19
Lelliottia amnigena, Lelliottia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15872..16462)
DNA (591bp) protein (197aa)
DnaA initiator-associating protein DiaA n=27 Tax=Enterobacter RepID=D5CC93_ENTCC
DnaA initiator-associating protein DiaA
DnaA initiator-associating protein DiaA {ECO:0000256|HAMAP-Rule:MF_01157, ECO:0000256|SAAS:SAAS00014432}; TaxID=1439331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Lelliottia.;" source="Lelliottia amnigena CHS 78.;"
L3_063_052G1_scaffold_371_20
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16492..16881)
DNA (390bp) protein (130aa)
UPF0102 protein YraN n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZN1_ESCHE
UPF0102 protein YraN {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
yraN; hypothetical protein
L3_063_052G1_scaffold_371_21
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16839..18875)
DNA (2037bp) protein (679aa)
Penicillin-binding protein activator LpoA n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZN2_ESCHE
Penicillin-binding protein activator LpoA {ECO:0000256|HAMAP-Rule:MF_01890}; Short=PBP activator LpoA {ECO:0000256|HAMAP-Rule:MF_01890};; Flags: Precursor;; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
LppC family protein
L3_063_052G1_scaffold_371_22
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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18940..19803
DNA (864bp) protein (288aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZN3_ESCHE
hypothetical protein
L3_063_052G1_scaffold_371_23
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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19807..20823
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Enterobacter cloacae UCICRE 11 RepID=V3FBL7_ENTCL
cell division protein Fic
Cell division protein Fic {ECO:0000313|EMBL:KJL56333.1}; TaxID=550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae.;"
L3_063_052G1_scaffold_371_24
Enterobacter aerogenes, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20828..21601)
DNA (774bp) protein (258aa)
Galactitol utilization operon repressor n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZN4_ESCHE
Enterobacter aerogenes strain DDE1 c8, whole genome shotgun sequence {ECO:0000313|EMBL:KIU33028.1}; TaxID=548 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter aerogenes (Aerobacter aerogenes).;"
galactitol utilization operon repressor
L3_063_052G1_scaffold_371_25
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(21822..23168)
DNA (1347bp) protein (449aa)
PTS system, galactitol-specific IIC component {ECO:0000313|EMBL:CDL19709.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CDL19709.1};; TaxID=1432554 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae IS53.;"
PTS system, galactitol-specific IIC component n=1 Tax=Salmonella enterica subsp. enterica serovar Meleagridis str. 0047 RepID=V1UMR2_SALET
PTS system galactitol-specific transporter subunit IIC
L3_063_052G1_scaffold_371_26
Citrobacter koseri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23174..23458)
DNA (285bp) protein (95aa)
Galactitol-specific phosphotransferase enzyme IIB component n=2 Tax=Citrobacter RepID=G9SD25_CITFR
Component IIB of galactitol-specific phosphotransferase system {ECO:0000313|EMBL:CDZ86004.1}; TaxID=545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter koseri (Citrobacter diversus).;"
PTS system galactitol-specific transporter subunit IIB
L3_063_052G1_scaffold_371_27
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23473..23943)
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SD24_CITFR
PTS system galactitol-specific enzyme IIA component {ECO:0000313|EMBL:ETX62406.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
PTS system galactitol-specific transporter subunit IIA
L3_063_052G1_scaffold_371_28
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(24298..25869)
DNA (1572bp) protein (524aa)
D-galactarate dehydratase n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZN5_ESCHE
D-galactarate dehydratase {ECO:0000313|EMBL:GAB51193.1}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
D-galactarate dehydratase
L3_063_052G1_scaffold_371_29
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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26267..27595
DNA (1329bp) protein (443aa)
Putative galactarate transporter n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZN6_ESCHE
Putative galactarate transporter {ECO:0000313|EMBL:GAB51194.1}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
d-galactonate transporter
L3_063_052G1_scaffold_371_30
Escherichia hermannii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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27622..28389
DNA (768bp) protein (256aa)
5-keto-4-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; Short=KDGluc aldolase {ECO:0000256|HAMAP-Rule:MF_01291};; Short=KDGlucA {ECO:0000256|HAMAP-Rule:MF_01291};; EC=4.1.2.20 {ECO:0000256|HAMAP-Rule:MF_01291};; 2-dehydro-3-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; 2-keto-3-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; 5-dehydro-4-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; Alpha-keto-beta-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; TaxID=1115512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia hermannii NBRC 105704.;"
alpha-dehydro-beta-deoxy-D-glucarate aldolase (EC:4.1.2.20)
5-keto-4-deoxy-D-glucarate aldolase n=1 Tax=Escherichia hermannii NBRC 105704 RepID=H5UZN7_ESCHE
Displaying items 1-30 of 32 in total

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