ggKbase home page

L3_063_052G1_scaffold_424

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_052G1_scaffold_424_1
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..222
DNA (222bp) protein (74aa)
PTS system, lactose/cellobiose IIC component family protein n=2 Tax=Clostridium sordellii RepID=T0EA69_CLOSO
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
PTS lactose/cellobiose IIC component
L3_063_052G1_scaffold_424_2
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(397..1050)
DNA (654bp) protein (218aa)
Nitroreductase family protein n=2 Tax=Turicibacter RepID=D4W6M2_9FIRM
Nitroreductase family protein {ECO:0000313|EMBL:EFF63414.1}; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Turicibacter.;" source="Turicibacter sanguinis PC909.;"
nitroreductase
L3_063_052G1_scaffold_424_3
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1177..1866
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H4G4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH99361.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein
L3_063_052G1_scaffold_424_4
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2121..3887
DNA (1767bp) protein (589aa)
Transcriptional regulator (PAS, AAA-type ATPase, and DNA-binding domain containing protein) n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U3G1_9CLOT
Transcriptional regulator (PAS, AAA-type ATPase, and DNA-binding domain containing protein) {ECO:0000313|EMBL:EKQ55052.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
sigma-54-dependent transcriptional regulator YgeV
L3_063_052G1_scaffold_424_5
unknown

Not on your lists

4041..4136
DNA (96bp) protein (32aa)

This feature has no annotations

L3_063_052G1_scaffold_424_6
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4129..5334
DNA (1206bp) protein (402aa)
dpaL; diaminopropionate ammonia-lyase (EC:4.3.1.15)
Diaminopropionate ammonia-lyase {ECO:0000313|EMBL:ACD23421.1}; EC=4.3.1.15 {ECO:0000313|EMBL:ACD23421.1};; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
Diaminopropionate ammonia-lyase n=2 Tax=Clostridium botulinum B RepID=B2TKM5_CLOBB
L3_063_052G1_scaffold_424_7
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5354..6541
DNA (1188bp) protein (396aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U2D4_9CLOT
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:EKQ55056.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
peptidase
L3_063_052G1_scaffold_424_8
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6558..8141
DNA (1584bp) protein (528aa)
D-aminoacylase n=1 Tax=Clostridium intestinale URNW RepID=U2PZE3_9CLOT
D-aminoacylase {ECO:0000313|EMBL:ERK29144.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
D-aminoacylase
L3_063_052G1_scaffold_424_9
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8158..9483
DNA (1326bp) protein (442aa)
Chlorohydrolase/aminohydrolase n=1 Tax=Clostridium intestinale URNW RepID=U2PZ02_9CLOT
Chlorohydrolase/aminohydrolase {ECO:0000313|EMBL:ERK29009.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
chlorohydrolase/aminohydrolase
L3_063_052G1_scaffold_424_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9505..10872
DNA (1368bp) protein (456aa)
Xanthine permease n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7T7Z0_CLOSG
Clostridium botulinum B2 450 B2_450_contig007, whole genome shotgun sequence {ECO:0000313|EMBL:KIS24677.1}; TaxID=1379739 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum B2 450.;"
xanthine permease
L3_063_052G1_scaffold_424_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10890..11978
DNA (1089bp) protein (363aa)
diguanylate cyclase n=1 Tax=Clostridium botulinum RepID=UPI0002D587CD
dihydroorotate dehydrogenase family protein
Diguanylate cyclase {ECO:0000313|EMBL:KIL08846.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L3_063_052G1_scaffold_424_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11992..13404
DNA (1413bp) protein (471aa)
Dihydropyrimidinase {ECO:0000313|EMBL:EQE59655.1}; EC=3.5.2.2 {ECO:0000313|EMBL:EQE59655.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
dihydropyrimidinase (EC:3.5.2.2)
Dihydropyrimidinase n=1 Tax=Clostridium difficile CD45 RepID=T2Y390_CLODI
L3_063_052G1_scaffold_424_13
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13391..15949
DNA (2559bp) protein (853aa)
Selenium-dependent molybdenum hydroxylase 1 n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V0D8_CLOBA
selenium-dependent molybdenum hydroxylase 1
Aldehyde oxidoreductase {ECO:0000313|EMBL:KIL08851.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L3_063_052G1_scaffold_424_14
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15975..16358
DNA (384bp) protein (128aa)
Putative endoribonuclease L-PSP n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q5Q0_9CLOT
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:EKY23226.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
yabJ; rutC family protein yabJ
L3_063_052G1_scaffold_424_15
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16404..16943
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UR56_CLOBO
Uncharacterized protein {ECO:0000313|EMBL:KEI11081.1}; TaxID=1443122 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi B str. NCTC 9691.;"
hypothetical protein
L3_063_052G1_scaffold_424_16
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16952..17977
DNA (1026bp) protein (342aa)
Putative iron chelate uptake ABC transporter, solute-binding protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UR47_CLOBO
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIL08857.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
iron ABC transporter substrate-binding protein
L3_063_052G1_scaffold_424_17
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17974..18960
DNA (987bp) protein (329aa)
Iron chelate uptake ABC transporter, FeCT family, permease protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V0E5_CLOBA
iron chelate uptake ABC transporter permease
ABC 3 transport family protein {ECO:0000313|EMBL:AIY79058.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L3_063_052G1_scaffold_424_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19041..19742
DNA (702bp) protein (234aa)
Putative iron ABC transporter, ATP-binding protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V0E6_CLOBA
putative iron ABC transporter ATP-binding protein
Iron ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIL08859.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L3_063_052G1_scaffold_424_19
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19736..20332
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7MC62_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI97737.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
putative MobA-like protein
L3_063_052G1_scaffold_424_20
unknown

Not on your lists

20426..20758
DNA (333bp) protein (111aa)

This feature has no annotations

L3_063_052G1_scaffold_424_21
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20792..21334)
DNA (543bp) protein (181aa)
Heat shock protein DnaJ domain-containing protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6LMH8_9CLOT
Heat shock protein DnaJ domain-containing protein {ECO:0000313|EMBL:CDB75322.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
heat shock protein DnaJ domain-containing protein
L3_063_052G1_scaffold_424_22
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21359..22225)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EXX2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG01106.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
L3_063_052G1_scaffold_424_23
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22235..23146)
DNA (912bp) protein (304aa)
Putative Patatin family phospholipase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EPX6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KEZ88158.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
patatin-like phospholipase
L3_063_052G1_scaffold_424_24
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23467..25716
DNA (2250bp) protein (750aa)
Ser/Thr phosphatase family protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHW2_9CLOT
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EEG28934.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
metallophosphoesterase
L3_063_052G1_scaffold_424_25
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25905..27425
DNA (1521bp) protein (507aa)
Putative Helicase domain-containing protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EXY0_9CLOT
Putative Helicase domain-containing protein {ECO:0000313|EMBL:CDG01116.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
ATP-dependent RNA helicase, superfamily II
L3_063_052G1_scaffold_424_26
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27539..27802)
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HRR4_9CLOT
Coat F domain protein {ECO:0000313|EMBL:KJJ66078.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
coat F domain protein
L3_063_052G1_scaffold_424_27
unknown

Not on your lists

comp(27815..27991)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGZ3_9CLOT
L3_063_052G1_scaffold_424_28
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28168..29046
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1M0V3_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF59195.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_063_052G1_scaffold_424_29
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29107..29868)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H4Q4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98872.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
zinc transporter ZupT
L3_063_052G1_scaffold_424_30
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30021..31121
DNA (1101bp) protein (367aa)
Conserved membrane protein n=1 Tax=Caloramator australicus RC3 RepID=I7KVK0_9CLOT
Conserved membrane protein {ECO:0000313|EMBL:CCJ34059.1}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
ytvI; sporulation integral membrane protein YtvI
Displaying items 1-30 of 57 in total

View Taxonomy