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L3_063_052G1_scaffold_432

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_052G1_scaffold_432_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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384..1550
DNA (1167bp) protein (389aa)
putative beta-glucosidase (EC:3.2.1.58)
Putative beta-glucosidase {ECO:0000313|EMBL:CAJ66846.1}; EC=3.2.1.58 {ECO:0000313|EMBL:CAJ66846.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Cellulase family protein n=44 Tax=Clostridium difficile RepID=T2VBJ0_CLODI
L3_063_052G1_scaffold_432_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1572..3218
DNA (1647bp) protein (549aa)
Putative glycoside hydrolase {ECO:0000313|EMBL:CEJ96535.1}; EC=3.2.1.- {ECO:0000313|EMBL:CEJ96535.1};; Xylan 1%2C4-beta-xylosidase {ECO:0000313|EMBL:CKH92516.1}; EC=3.2.1.37 {ECO:0000313|EMBL:CKH92516.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative glycoside hydrolase (EC:3.2.1.-)
Xylan beta-1,4-xylosidase n=119 Tax=Clostridium difficile RepID=T3IPI8_CLODC
L3_063_052G1_scaffold_432_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3315..4688
DNA (1374bp) protein (458aa)
Sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein n=14 Tax=Clostridium difficile RepID=T2UKQ0_CLODI
Sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein {ECO:0000313|EMBL:EQG79042.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
xylose transporter
L3_063_052G1_scaffold_432_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5133..6086
DNA (954bp) protein (318aa)
Bacterial regulatory s, crp family protein n=190 Tax=Clostridium difficile RepID=C9XIE7_CLODC
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CCL32549.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_063_052G1_scaffold_432_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6124..7086
DNA (963bp) protein (321aa)
Acetoin:2,6-dichlorophenolindophenol oxidoreductase alpha subunit n=200 Tax=Clostridium difficile RepID=C9XIE8_CLODC
acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein {ECO:0000313|EMBL:EQE70952.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_063_052G1_scaffold_432_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7111..8097
DNA (987bp) protein (329aa)
Acetoin:2,6-dichlorophenolindophenol oxidoreductase beta subunit n=151 Tax=Clostridium difficile RepID=C9XIE9_CLODC
acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta
Transketolase, pyrimidine binding domain protein {ECO:0000313|EMBL:EQG78973.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_063_052G1_scaffold_432_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8110..9156
DNA (1047bp) protein (349aa)
acoC; Acetoin dehydrogenase E2 component(dihydrolipoamide acetyltransferase) (EC:2.3.1.12)
Acetoin dehydrogenase E2 component (Dihydrolipoamide acetyltransferase) {ECO:0000313|EMBL:CDT02327.1}; EC=2.3.1.12 {ECO:0000313|EMBL:CDT02327.1};; Acetoin dehydrogenase E2 component(Dihydrolipoamide acetyltransferase) {ECO:0000313|EMBL:CEJ96540.1}; EC=2.3.1.12 {ECO:0000313|EMBL:CEJ96540.1};; E2 component of acetoin dehydrogenase enzyme system (Dihydrolipoamide acetyltransferase) {ECO:0000313|EMBL:CKH92679.1}; EC=2.3.1.12 {ECO:0000313|EMBL:CKH92679.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
2-oxoacid dehydrogenases acyltransferase family protein n=81 Tax=Clostridium difficile RepID=T3IPE8_CLODC
L3_063_052G1_scaffold_432_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9323..11053
DNA (1731bp) protein (577aa)
acoL; Acetoin dehydrogenase E3 component(dihydrolipoamide dehydrogenase) (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Dihydrolipoyl dehydrogenase n=52 Tax=Clostridium difficile RepID=T3IQP3_CLODC
L3_063_052G1_scaffold_432_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11471..14419
DNA (2949bp) protein (983aa)
Sigma-54 interaction domain protein n=2 Tax=Clostridium difficile RepID=T4Q4J5_CLODI
Transcription antiterminator, PTS operon regulator {ECO:0000313|EMBL:CDS90301.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
PTS operon transcription antiterminator
L3_063_052G1_scaffold_432_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14397..14861
DNA (465bp) protein (155aa)
PTS system, IIa component n=187 Tax=Clostridium difficile RepID=C9XIF3_CLODC
PTS system transporter subunit IIA
PTS system, galactitol-specific IIA component {ECO:0000313|EMBL:CCL32555.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_063_052G1_scaffold_432_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15006..15308
DNA (303bp) protein (101aa)
PTS system, galactitol-specific IIB component n=42 Tax=Clostridium difficile RepID=Q18CC5_CLOD6
PTS system, galactitol-specific IIB component
PTS system, galactitol-specific IIB component {ECO:0000313|EMBL:CAJ66856.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_063_052G1_scaffold_432_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15385..16734
DNA (1350bp) protein (450aa)
PTS system sugar-specific permease component family protein n=21 Tax=Clostridium difficile RepID=T2XW84_CLODI
PTS system sugar-specific permease component family protein {ECO:0000313|EMBL:EQI95509.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
PTS system transporter subunit IIC
L3_063_052G1_scaffold_432_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16769..17242
DNA (474bp) protein (158aa)
Uncharacterized protein n=77 Tax=Clostridium difficile RepID=T2V3E6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL24799.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
conserved hypothetical protein
L3_063_052G1_scaffold_432_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17414..18064
DNA (651bp) protein (217aa)
Class II Aldolase and Adducin N-terminal domain protein n=169 Tax=Clostridium difficile RepID=T3IKK7_CLODC
putative sugar-phosphate aldolase
Putative sugar-phosphate aldolase {ECO:0000313|EMBL:CAJ66859.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_063_052G1_scaffold_432_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18238..19170
DNA (933bp) protein (311aa)
putative lipoate-protein ligase (EC:2.7.7.63)
Lipoate-protein ligase {ECO:0000313|EMBL:CKH92972.1}; EC=2.7.7.63 {ECO:0000313|EMBL:CKH92972.1};; Lipoyltransferase and lipoate-protein ligase {ECO:0000313|EMBL:CDS88948.1}; Putative lipoate-protein ligase {ECO:0000313|EMBL:CDS90313.1}; EC=2.7.7.63 {ECO:0000313|EMBL:CDS90313.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Lipoyltransferase and lipoate-ligase family protein n=117 Tax=Clostridium difficile RepID=T3IKJ1_CLODC
L3_063_052G1_scaffold_432_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19444..20157
DNA (714bp) protein (238aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=81 Tax=Clostridium difficile RepID=T2XBN4_CLODI
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
L3_063_052G1_scaffold_432_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20154..20639
DNA (486bp) protein (162aa)
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphatesynthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Clostridium difficile RepID=T4Q3E2_CLODI
L3_063_052G1_scaffold_432_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


21006..22721
DNA (1716bp) protein (572aa)
proS; prolyl-tRNA ligase (EC:6.1.1.15)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00173448};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Proline--tRNA ligase 1 n=123 Tax=Clostridium difficile RepID=SYP1_CLOD6
L3_063_052G1_scaffold_432_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22843..24288
DNA (1446bp) protein (482aa)
proS1; Prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Proline--tRNA ligase 2 n=185 Tax=Clostridium difficile RepID=SYP2_CLOD6
Prolyl-tRNA synthetase suspected. See adjacent gene [L3_063_052G1_scaffold_432_18].
L3_063_052G1_scaffold_432_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24795..25988)
DNA (1194bp) protein (398aa)
Transposase Int-Tn n=6 Tax=Clostridium difficile RepID=T2TE91_CLODI
Transposase Int-Tn {ECO:0000313|EMBL:EQJ63604.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Site-specific recombinase XerD
L3_063_052G1_scaffold_432_21
Peptostreptococcaceae bacterium OBRC8, Clostridiales, Clostridia, Firmicutes, Bacteria

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26351..26872
DNA (522bp) protein (174aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PXL3_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EJU23898.1}; TaxID=796941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium OBRC8.;"
Displaying 21 items

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