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L3_063_052G1_scaffold_441

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_052G1_scaffold_441_1
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..885
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Clostridium botulinum RepID=UPI00037426D9
hypothetical protein
UPF0210 protein CLH_1879 {ECO:0000255|HAMAP-Rule:MF_01221}; TaxID=508767 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Alaska E43 / Type E3).;"
L3_063_052G1_scaffold_441_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1224..1979
DNA (756bp) protein (252aa)
exodeoxyribonuclease III (EC:3.1.11.2)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IY22_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41596.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L3_063_052G1_scaffold_441_3
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2275..3696)
DNA (1422bp) protein (474aa)
stage V sporulation protein AF n=1 Tax=Clostridium sp. JC122 RepID=UPI000287BE5A
stage V sporulation protein AF
Stage V sporulation protein AF {ECO:0000313|EMBL:CDM68747.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_063_052G1_scaffold_441_4
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3790..4209
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6KLY4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB74495.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
hypothetical protein
L3_063_052G1_scaffold_441_5
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4266..5006
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TBK2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ57278.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_063_052G1_scaffold_441_6
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5114..7039
DNA (1926bp) protein (642aa)
ABC transporter ATP-binding protein uup n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UTY4_CLOBO
ABC transporter ATP-binding protein uup {ECO:0000313|EMBL:EES48415.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
ABC transporter
L3_063_052G1_scaffold_441_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7117..8544
DNA (1428bp) protein (476aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83015.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_063_052G1_scaffold_441_8
Clostridium tetani, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8584..10332)
DNA (1749bp) protein (583aa)
Multidrug resistance ABC transporter n=1 Tax=Clostridium tetani 12124569 RepID=U6EW88_CLOTA
multidrug resistance ABC transporter
Multidrug resistance ABC transporter {ECO:0000313|EMBL:CDI48485.1}; TaxID=1231072 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetani 12124569.;"
L3_063_052G1_scaffold_441_9
Listeriaceae bacterium FSL A5-0209, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10338..12077)
DNA (1740bp) protein (580aa)
ABC transporter, ATP-binding/permease protein n=1 Tax=Listeria monocytogenes SLCC2540 RepID=J7PLC9_LISMN
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGL39100.1}; TaxID=1497679 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae.;" source="Listeriaceae bacterium FSL A5-0209.;"
ABC transporter ATP-binding protein/permease
L3_063_052G1_scaffold_441_10
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12241..12903
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2NKI4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERK29638.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
prophage LambdaCh01, restriction endonuclease
L3_063_052G1_scaffold_441_11
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12916..13107
DNA (192bp) protein (64aa)
Uncharacterized protein n=3 Tax=Clostridium botulinum RepID=B2TMM5_CLOBB
Uncharacterized protein {ECO:0000313|EMBL:KGN03124.1}; TaxID=1444290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi A str. 4570.;"
hypothetical protein
L3_063_052G1_scaffold_441_12
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13287..14810
DNA (1524bp) protein (508aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3P9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97885.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein
L3_063_052G1_scaffold_441_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14995..17169
DNA (2175bp) protein (725aa)
DNA topoisomerase 3 {ECO:0000256|HAMAP-Rule:MF_00953}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00953, ECO:0000256|SAAS:SAAS00046608};; DNA topoisomerase III {ECO:0000256|HAMAP-Rule:MF_00953}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
DNA topoisomerase n=2 Tax=Clostridium butyricum DKU-01 RepID=M8J9Z2_CLOBU
DNA topoisomerase III
L3_063_052G1_scaffold_441_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17280..18506
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U7A3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66996.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
peptidase S8 and S53 subtilisin kexin sedolisin
L3_063_052G1_scaffold_441_15
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19267..20625
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H2T1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97886.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
xerC; site-specific tyrosine recombinase XerC
L3_063_052G1_scaffold_441_16
unknown

Not on your lists

comp(20659..20922)
DNA (264bp) protein (88aa)

This feature has no annotations

L3_063_052G1_scaffold_441_17
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21191..21760)
DNA (570bp) protein (190aa)
Putative lipoprotein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UUG2_CLOBO
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AIY83626.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_063_052G1_scaffold_441_18
unknown

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comp(21826..22008)
DNA (183bp) protein (61aa)

This feature has no annotations

L3_063_052G1_scaffold_441_19
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22078..22491)
DNA (414bp) protein (138aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TIB3_CLOBB
hypothetical protein
Protein containing Zn-finger domain {ECO:0000313|EMBL:CDH90722.1}; Uncharacterized protein {ECO:0000313|EMBL:ACD24029.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_063_052G1_scaffold_441_20
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22649..23254
DNA (606bp) protein (202aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
LexA repressor n=1 Tax=Clostridium intestinale URNW RepID=U2PVW8_9CLOT
LexA repressor
L3_063_052G1_scaffold_441_21
Pontibacillus chungwhensis, Pontibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23316..23903
DNA (588bp) protein (196aa)
Uncharacterized protein {ECO:0000313|EMBL:KGP91338.1}; TaxID=1385513 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Pontibacillus.;" source="Pontibacillus chungwhensis BH030062.;"
L3_063_052G1_scaffold_441_22
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23939..25222)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3Q1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97890.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
aluminum resistance protein
L3_063_052G1_scaffold_441_23
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25299..25544)
DNA (246bp) protein (82aa)
Protein hfq n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H2T6_9CLOT
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hfq; RNA chaperone Hfq
L3_063_052G1_scaffold_441_24
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25588..25923)
DNA (336bp) protein (112aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
miaA; tRNA dimethylallyltransferase MiaA (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M1D1_9CLOT
L3_063_052G1_scaffold_441_25
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26028..26438)
DNA (411bp) protein (137aa)
miaA; tRNA dimethylallyltransferase MiaA (EC:2.5.1.75)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
tRNA dimethylallyltransferase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MU87_CLOSA
L3_063_052G1_scaffold_441_26
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26454..27983)
DNA (1530bp) protein (510aa)
DNA mismatch repair protein MutL n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FM92_9CLOT
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
mutL; DNA mismatch repair protein
Displaying 26 items

View Taxonomy