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L3_063_052G1_scaffold_454

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_052G1_scaffold_454_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..697
DNA (696bp) protein (232aa)
ABC-type transport system, sugar-familyATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=15 Tax=Clostridium difficile RepID=T2XR37_CLODI
ABC transporter family protein {ECO:0000313|EMBL:EQE68494.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_063_052G1_scaffold_454_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

828..1850
DNA (1023bp) protein (341aa)
ABC transporter substrate binding protein n=140 Tax=Clostridium difficile RepID=G6BUQ2_CLODI
ABC transporter substrate binding family protein {ECO:0000313|EMBL:EQG78376.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
ABC transporter substrate-binding protein
L3_063_052G1_scaffold_454_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2014..2571)
DNA (558bp) protein (186aa)
Maltose O-acetyltransferase {ECO:0000313|EMBL:CAJ67705.1}; EC=2.3.1.79 {ECO:0000313|EMBL:CAJ67705.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Maltose O-acetyltransferase n=99 Tax=Clostridium difficile RepID=C9XMA1_CLODC
maltose O-acetyltransferase
L3_063_052G1_scaffold_454_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2577..3641)
DNA (1065bp) protein (355aa)
ABC transporter family protein n=2 Tax=Clostridium difficile RepID=T4PSW4_CLODI
modC; molybdenum ABC transporter ATP-binding protein
Putative molybdenum ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CBE02858.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_063_052G1_scaffold_454_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3654..4403)
DNA (750bp) protein (250aa)
Molybdate ABC transporter, permease protein n=7 Tax=Clostridium difficile RepID=G6B6W3_CLODI
modB; molybdenum ABC transporter permease
ABC-type transport system, molybdenum-specific permease {ECO:0000313|EMBL:CCL20986.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_063_052G1_scaffold_454_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4486..5298)
DNA (813bp) protein (271aa)
Molybdate ABC transporter, periplasmic molybdate-binding protein n=105 Tax=Clostridium difficile RepID=G6BUQ6_CLODI
Molybdate ABC transporter, periplasmic molybdate-binding protein {ECO:0000313|EMBL:EQG78356.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
modA; ABC-type transport system, molybdenum-specificextracellular solute-binding protein
L3_063_052G1_scaffold_454_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5491..6420
DNA (930bp) protein (310aa)
DNA binding , excisionase family domain protein n=9 Tax=Clostridium difficile RepID=T2W124_CLODI
Putative molybdate binding regulator {ECO:0000313|EMBL:CDS84791.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS84358.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L3_063_052G1_scaffold_454_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6581..7030)
DNA (450bp) protein (150aa)
Uncharacterized protein n=72 Tax=Clostridium difficile RepID=T2TQP9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQG78311.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
conserved hypothetical protein
L3_063_052G1_scaffold_454_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7233..8213)
DNA (981bp) protein (327aa)
Dienelactone hydrolase family protein n=9 Tax=Clostridium difficile RepID=T3EP01_CLODI
uncharacterised protein
Uncharacterized protein {ECO:0000313|EMBL:CCL20982.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_063_052G1_scaffold_454_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8418..9272)
DNA (855bp) protein (285aa)
Uncharacterized protein n=119 Tax=Clostridium difficile RepID=C9XM94_CLODC
hypothetical protein
Putative ADP-ribose binding protein {ECO:0000313|EMBL:CCL20981.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_063_052G1_scaffold_454_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9595..10923)
DNA (1329bp) protein (443aa)
Maltose-6'-phosphate glucosidase {ECO:0000313|EMBL:CCL32962.1}; EC=3.2.1.122 {ECO:0000313|EMBL:CCL32962.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Maltose-6'-phosphate glucosidase malH n=2 Tax=Clostridium difficile RepID=T4PT57_CLODI
6-phospho-alpha-glucosidase
L3_063_052G1_scaffold_454_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11071..11400)
DNA (330bp) protein (110aa)
PTS system, IIa component n=163 Tax=Clostridium difficile RepID=C9XM92_CLODC
PTS system transporter subunit IIA
PTS system, Lactose/Cellobiose specific IIA subunit {ECO:0000313|EMBL:EQE68486.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_063_052G1_scaffold_454_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11424..12713)
DNA (1290bp) protein (430aa)
PTS system, lactose/cellobiose IIC component family protein n=2 Tax=Clostridium difficile RepID=T4PSY4_CLODI
PTS system, IIc component
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_063_052G1_scaffold_454_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12729..12977)
DNA (249bp) protein (83aa)
PTS system, Lactose/Cellobiose specific IIB subunit n=2 Tax=Clostridium difficile RepID=T4PSV5_CLODI
PTS system transporter subunit IIB
PTS system, lactose/cellobiose-family IIB component {ECO:0000313|EMBL:CCL32959.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_063_052G1_scaffold_454_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12958..13056)
DNA (99bp) protein (33aa)
PTS system, Lactose/Cellobiose specific IIB subunit n=7 Tax=Clostridium difficile RepID=T2V341_CLODI
PTS system transporter subunit IIB
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:EHJ31112.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_063_052G1_scaffold_454_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13171..13800)
DNA (630bp) protein (210aa)
MgsA AAA+ ATPase family protein n=211 Tax=Clostridium difficile RepID=C9XM89_CLODC
hypothetical protein
Recombination factor protein RarA {ECO:0000313|EMBL:CKH55959.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS84780.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_063_052G1_scaffold_454_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14015..16672)
DNA (2658bp) protein (886aa)
sigma-54 factor, interaction domain-containing protein,transcriptional regulatory protein levr (EC:2.7.1.-)
AAA domain family protein n=81 Tax=Clostridium difficile RepID=T2TPN5_CLODI
AAA domain family protein {ECO:0000313|EMBL:EQE68498.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_063_052G1_scaffold_454_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17031..17975)
DNA (945bp) protein (315aa)
ABC transporter family protein n=2 Tax=Clostridium difficile RepID=T4PTZ8_CLODI
oppF; oligopeptide ABC transporter ATP-binding protein
Oligopeptide ABC transporter (ATP-binding protein) {ECO:0000313|EMBL:CCL20974.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_063_052G1_scaffold_454_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17968..18981)
DNA (1014bp) protein (338aa)
Oligopeptide ABC transporter%2C ATP-binding protein {ECO:0000313|EMBL:CKH56157.1}; EC=3.6.3.- {ECO:0000313|EMBL:CKH56157.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein n=1 Tax=Clostridium difficile P42 RepID=T4PSX8_CLODI
oppD; ABC transporter ATP-binding protein
L3_063_052G1_scaffold_454_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19068..20636)
DNA (1569bp) protein (523aa)
Bacterial extracellular solute-binding s, 5 Middle family protein n=147 Tax=Clostridium difficile RepID=T3I7C6_CLODC
Bacterial extracellular solute-binding s, 5 Middle family protein {ECO:0000313|EMBL:EQE68484.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
oppA; ABC-type transport system, oligopeptide-familyextracellular solute-binding protein
L3_063_052G1_scaffold_454_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20749..21660)
DNA (912bp) protein (304aa)
Binding--dependent transport system inner membrane component family protein n=135 Tax=Clostridium difficile RepID=T3I2D9_CLODC
oppC; oligopeptide family ABC transporter permease
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:EQG78313.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_063_052G1_scaffold_454_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21644..22666)
DNA (1023bp) protein (341aa)
ABC transporter, permease protein n=48 Tax=Clostridium difficile RepID=G6B6Y0_CLODI
ABC transporter, permease protein {ECO:0000313|EMBL:EHJ31389.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
oppB; oligopeptide ABC transporter permease
L3_063_052G1_scaffold_454_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22957..23391
DNA (435bp) protein (145aa)
Bacterial regulatory , arsR family protein n=197 Tax=Clostridium difficile RepID=T3I2G2_CLODC
Transcriptional regulator, MarR family
Bacterial regulatory , arsR family protein {ECO:0000313|EMBL:EQE68460.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_063_052G1_scaffold_454_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23394..23792
DNA (399bp) protein (133aa)
Eukaryotic cytochrome b561 family protein n=182 Tax=Clostridium difficile RepID=T3I3G5_CLODC
putative membrane protein
Eukaryotic cytochrome b561 family protein {ECO:0000313|EMBL:EQI88596.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L3_063_052G1_scaffold_454_25
unknown

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comp(23964..24068)
DNA (105bp) protein (35aa)

This feature has no annotations

L3_063_052G1_scaffold_454_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24242..24529)
DNA (288bp) protein (96aa)
NifU-like protein n=1 Tax=Clostridium difficile 70-100-2010 RepID=G6BUS4_CLODI
NifU-like protein {ECO:0000313|EMBL:EHJ31392.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_063_052G1_scaffold_454_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24501..24710)
DNA (210bp) protein (70aa)
putative glutamate carboxypeptidase (EC:3.5.1.-)
Putative glutamate carboxypeptidase {ECO:0000313|EMBL:CCL20965.1}; EC=3.5.1.- {ECO:0000313|EMBL:CCL20965.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Amidohydrolase family protein n=1 Tax=Clostridium difficile F249 RepID=T4AE41_CLODI
L3_063_052G1_scaffold_454_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25060..25341
DNA (282bp) protein (94aa)
Putative cell surface protein n=4 Tax=Clostridium difficile RepID=U3Z6W0_CLODI
Cna protein B-type domain protein {ECO:0000313|EMBL:EEA81409.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
Displaying 28 items

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