ggKbase home page

L3_063_052G1_scaffold_871

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_052G1_scaffold_871_1
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..875)
DNA (873bp) protein (291aa)
Radical SAM domain-containing protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MM21_CLOSA
radical SAM domain-containing protein
Radical SAM domain-containing protein {ECO:0000313|EMBL:AGX41568.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_063_052G1_scaffold_871_2
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1075..2268)
DNA (1194bp) protein (398aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
LL-diaminopimelate aminotransferase (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAG2_9CLOT
L3_063_052G1_scaffold_871_3
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2252..3868)
DNA (1617bp) protein (539aa)
CTP synthase (EC:6.3.4.2)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
CTP synthase n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UGF0_RUMA7
L3_063_052G1_scaffold_871_4
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3861..4700)
DNA (840bp) protein (280aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MN77_9FIRM
L3_063_052G1_scaffold_871_5
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4706..5275)
DNA (570bp) protein (190aa)
UPI0003D68577 related cluster n=1 Tax=unknown RepID=UPI0003D68577
ANTAR domain protein {ECO:0000313|EMBL:CDA11246.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ANTAR domain-containing protein
L3_063_052G1_scaffold_871_6
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5304..6626)
DNA (1323bp) protein (441aa)
L-glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase, type I n=7 Tax=Clostridium thermocellum RepID=A3DBW4_CLOTH
Glutamine synthetase type I {ECO:0000313|EMBL:GAE87020.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
L3_063_052G1_scaffold_871_7
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6866..7873
DNA (1008bp) protein (336aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
asnA2; aspartate--ammonia ligase AsnA (EC:6.3.1.1)
Aspartate--ammonia ligase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAH1_9CLOT
L3_063_052G1_scaffold_871_8
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7887..9983
DNA (2097bp) protein (699aa)
Glutamate--ammonia ligase, catalytic domain protein {ECO:0000313|EMBL:EEG31517.1}; EC=6.3.1.2 {ECO:0000313|EMBL:EEG31517.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Glutamate--ammonia ligase, catalytic domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAH2_9CLOT
glutamine synthetase
L3_063_052G1_scaffold_871_9
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10024..10152)
DNA (129bp) protein (43aa)
rnz; ribonuclease Z (EC:3.1.26.11)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
Ribonuclease Z n=2 Tax=Clostridium botulinum B RepID=RNZ_CLOBB
Displaying 9 items

View Taxonomy