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L3_063_250G2_scaffold_474

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Displaying items 1-30 of 46 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_250G2_scaffold_474_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..508)
DNA (507bp) protein (169aa)
Formate dehydrogenase O gamma subunit {ECO:0000313|EMBL:CDL38424.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CDL38424.1};; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
Formate dehydrogenase-O iron-sulfur subunit n=2 Tax=Citrobacter RepID=C1MFU1_9ENTR
formate dehydrogenase
L3_063_250G2_scaffold_474_2
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(521..2935)
DNA (2415bp) protein (805aa)
Formate dehydrogenase-O, major subunit n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QNU4_CITFR
Formate dehydrogenase {ECO:0000313|EMBL:KJC04054.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
formate dehydrogenase
L3_063_250G2_scaffold_474_3
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2984..3571)
DNA (588bp) protein (196aa)
Formate dehydrogenase-O small subunit n=12 Tax=Enterobacteriaceae RepID=J0M1Z7_9ENTR
sulfate ABC transporter substrate-binding protein
Formate dehydrogenase-O major subunit {ECO:0000313|EMBL:EOQ44804.1}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
L3_063_250G2_scaffold_474_4
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3765..4601
DNA (837bp) protein (279aa)
Protein FdhD homolog n=1 Tax=Citrobacter freundii GTC 09629 RepID=R1HI93_CITFR
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
formate dehydrogenase
L3_063_250G2_scaffold_474_5
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4730..4942
DNA (213bp) protein (71aa)
Uncharacterized protein n=10 Tax=Enterobacteriaceae RepID=C1MFU7_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:CEJ66553.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
hypothetical protein
L3_063_250G2_scaffold_474_6
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4984..5307)
DNA (324bp) protein (108aa)
Branched-chain amino acid transport n=2 Tax=Citrobacter RepID=K8QUV6_CITFR
Branched-chain amino acid transport {ECO:0000313|EMBL:KJC04050.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
branched-chain amino acid transport
L3_063_250G2_scaffold_474_7
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5307..5966)
DNA (660bp) protein (220aa)
Azaleucine resistance protein n=5 Tax=Citrobacter RepID=J0VNA8_9ENTR
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KJC07406.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
branched-chain amino acid ABC transporter permease
L3_063_250G2_scaffold_474_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6068..6616
DNA (549bp) protein (183aa)
Uncharacterized protein n=2 Tax=Citrobacter RepID=C1MFV0_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KDF04922.1}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
DNA-binding protein
L3_063_250G2_scaffold_474_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6674..6988)
DNA (315bp) protein (105aa)
L-rhamnose mutarotase {ECO:0000256|HAMAP-Rule:MF_01663, ECO:0000256|SAAS:SAAS00048862}; EC=5.1.3.32 {ECO:0000256|HAMAP-Rule:MF_01663, ECO:0000256|SAAS:SAAS00169483};; Rhamnose 1-epimerase {ECO:0000256|HAMAP-Rule:MF_01663}; Type-3 mutarotase {ECO:0000256|HAMAP-Rule:MF_01663}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
L-rhamnose mutarotase n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9S945_CITFR
L-rhamnose mutarotase
L3_063_250G2_scaffold_474_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6985..8133)
DNA (1149bp) protein (383aa)
Lactaldehyde reductase {ECO:0000313|EMBL:KEL77748.1}; EC=1.1.1.77 {ECO:0000313|EMBL:KEL77748.1};; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
Lactaldehyde reductase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3B9B7_CITFR
alcohol dehydrogenase
L3_063_250G2_scaffold_474_11
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8145..8969)
DNA (825bp) protein (275aa)
Rhamnulose-1-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955}; EC=4.1.2.19 {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955};; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
rhamnulose-1-phosphate aldolase (EC:4.1.2.19)
Rhamnulose-1-phosphate aldolase n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QUV9_CITFR
L3_063_250G2_scaffold_474_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9113..10372)
DNA (1260bp) protein (420aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
sugar isomerase (EC:5.3.1.14)
L-rhamnose isomerase n=4 Tax=Citrobacter RepID=J0VNB3_9ENTR
L3_063_250G2_scaffold_474_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10369..11838)
DNA (1470bp) protein (490aa)
Rhamnulokinase {ECO:0000256|HAMAP-Rule:MF_01535}; Short=RhaB {ECO:0000256|HAMAP-Rule:MF_01535};; EC=2.7.1.5 {ECO:0000256|HAMAP-Rule:MF_01535};; ATP:L-rhamnulose phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01535}; L-rhamnulose 1-kinase {ECO:0000256|HAMAP-Rule:MF_01535}; Rhamnulose kinase {ECO:0000256|HAMAP-Rule:MF_01535}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Rhamnulokinase n=1 Tax=Citrobacter sp. KTE30 RepID=R8UIZ1_9ENTR
rhamnulokinase
L3_063_250G2_scaffold_474_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12142..12990
DNA (849bp) protein (283aa)
HTH-type transcriptional activator RhaS n=3 Tax=Citrobacter RepID=J1FZN5_9ENTR
HTH-type transcriptional activator RhaS {ECO:0000256|HAMAP-Rule:MF_01534, ECO:0000256|SAAS:SAAS00011458}; L-rhamnose operon regulatory protein RhaS {ECO:0000256|HAMAP-Rule:MF_01534}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
AraC family transcriptional regulator
L3_063_250G2_scaffold_474_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13148..13996
DNA (849bp) protein (283aa)
HTH-type transcriptional activator RhaR n=2 Tax=Citrobacter RepID=M3B9B2_CITFR
HTH-type transcriptional activator RhaR {ECO:0000256|HAMAP-Rule:MF_01533}; L-rhamnose operon transcriptional activator RhaR {ECO:0000256|HAMAP-Rule:MF_01533}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
rhaR; L-rhamnose operon transcriptional activator
L3_063_250G2_scaffold_474_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13993..14142)
DNA (150bp) protein (50aa)
L-rhamnose-proton symporter n=4 Tax=Citrobacter RepID=J1FZV9_9ENTR
L-rhamnose-proton symporter {ECO:0000256|HAMAP-Rule:MF_01532, ECO:0000256|SAAS:SAAS00088063}; L-rhamnose-H(+) transport protein {ECO:0000256|HAMAP-Rule:MF_01532}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
rhaT; rhamnose-proton symporter
L3_063_250G2_scaffold_474_17
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14165..14515)
DNA (351bp) protein (117aa)
L-rhamnose-proton symporter n=2 Tax=Citrobacter freundii RepID=K8QUW3_CITFR
rhamnose:proton symporter
L-rhamnose-proton symporter {ECO:0000256|HAMAP-Rule:MF_01532, ECO:0000256|SAAS:SAAS00088063}; L-rhamnose-H(+) transport protein {ECO:0000256|HAMAP-Rule:MF_01532}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
L3_063_250G2_scaffold_474_18
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14567..14680)
DNA (114bp) protein (38aa)
L-rhamnose-proton symporter n=2 Tax=Citrobacter RepID=C1MFV8_9ENTR
rhamnose:proton symporter
L-rhamnose-proton symporter {ECO:0000256|HAMAP-Rule:MF_01532, ECO:0000256|SAAS:SAAS00088063}; L-rhamnose-H(+) transport protein {ECO:0000256|HAMAP-Rule:MF_01532}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
L3_063_250G2_scaffold_474_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14970..15590
DNA (621bp) protein (207aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
Superoxide dismutase n=3 Tax=Citrobacter RepID=K8QNV8_CITFR
superoxide dismutase
L3_063_250G2_scaffold_474_20
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15823..16806
DNA (984bp) protein (328aa)
2-keto-3-deoxygluconate permease n=1 Tax=Citrobacter sp. 30_2 RepID=C1MFW0_9ENTR
2-keto-3-deoxygluconate permease {ECO:0000256|HAMAP-Rule:MF_00070}; Short=KDG permease {ECO:0000256|HAMAP-Rule:MF_00070};; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
2-keto-3-deoxygluconate permease
L3_063_250G2_scaffold_474_21
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16848..17744)
DNA (897bp) protein (299aa)
Lyase n=2 Tax=Citrobacter RepID=M3CS34_CITFR
Dihydrodipicolinate synthase {ECO:0000313|EMBL:KJC07418.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
dihydrodipicolinate synthase
L3_063_250G2_scaffold_474_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17897..18571
DNA (675bp) protein (225aa)
Protein yiim n=5 Tax=Citrobacter RepID=J1FZW3_9ENTR
6-N-hydroxylaminopurine resistance protein {ECO:0000313|EMBL:KJC07419.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
6-N-hydroxylaminopurine resistance protein
L3_063_250G2_scaffold_474_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18633..20006)
DNA (1374bp) protein (458aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
Two-component sensor kinase n=3 Tax=Citrobacter RepID=K8QUW8_CITFR
cpxA; two-component sensor protein
L3_063_250G2_scaffold_474_24
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20003..20701)
DNA (699bp) protein (233aa)
Transcriptional regulatory protein CpxR n=8 Tax=Citrobacter RepID=C1MFW7_9ENTR
Transcriptional regulatory protein CpxR {ECO:0000313|EMBL:ETX67080.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
transcriptional regulator
L3_063_250G2_scaffold_474_25
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20852..21352
DNA (501bp) protein (167aa)
Periplasmic protein CpxP n=1 Tax=Shigella flexneri 1235-66 RepID=I6HF02_SHIFL
P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein {ECO:0000313|EMBL:CEJ66529.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
cpxP; periplasmic repressor CpxP
L3_063_250G2_scaffold_474_26
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21500..22402
DNA (903bp) protein (301aa)
Cation-efflux pump FieF n=2 Tax=Citrobacter RepID=C1MFW9_9ENTR
Cation-efflux pump FieF {ECO:0000256|HAMAP-Rule:MF_01425}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
fieF; ferrous iron transporter
L3_063_250G2_scaffold_474_27
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22588..23550
DNA (963bp) protein (321aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=9 Tax=Citrobacter RepID=J1FZX2_9ENTR
L3_063_250G2_scaffold_474_28
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23753..24742
DNA (990bp) protein (330aa)
Sulfate transporter subunit n=3 Tax=Citrobacter RepID=K8QUX3_CITFR
Sulfate transporter subunit {ECO:0000313|EMBL:KJC04031.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
sulfate transporter subunit
L3_063_250G2_scaffold_474_29
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24847..25596
DNA (750bp) protein (250aa)
CDP-diacylglycerol pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00319}; EC=3.6.1.26 {ECO:0000256|HAMAP-Rule:MF_00319};; CDP-diacylglycerol phosphatidylhydrolase {ECO:0000256|HAMAP-Rule:MF_00319}; CDP-diglyceride hydrolase {ECO:0000256|HAMAP-Rule:MF_00319}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
CDP-diacylglycerol pyrophosphatase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DFA3_CITFR
CDP-diacylglycerol pyrophosphatase
L3_063_250G2_scaffold_474_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25670..26974
DNA (1305bp) protein (435aa)
Uncharacterized protein n=2 Tax=Citrobacter RepID=K8QLM5_CITFR
Sulfate symporter transmembrane region family protein {ECO:0000313|EMBL:KEL77772.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
citrate transporter
Displaying items 1-30 of 46 in total

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