ggKbase home page

L3_063_250G2_scaffold_310

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_250G2_scaffold_310_1
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2..1492)
DNA (1491bp) protein (497aa)
Putative CoA-substrate-specific enzyme activase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FCB4_9ACTN
Putative CoA-substrate-specific enzyme activase {ECO:0000313|EMBL:EEP43552.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
CoA-substrate-specific enzyme activase
L3_063_250G2_scaffold_310_2
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1495..2268)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8J1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA91404.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
TetR family transcriptional regulator
L3_063_250G2_scaffold_310_3
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2392..3246)
DNA (855bp) protein (285aa)
HAD hydrolase, family IIB n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8I9_9ACTN
HAD hydrolase, family IIB {ECO:0000313|EMBL:EEA91402.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
HAD-superfamily hydrolase
L3_063_250G2_scaffold_310_4
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3370..4395)
DNA (1026bp) protein (342aa)
Putative beta-lactamase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8I8_9ACTN
Putative beta-lactamase {ECO:0000313|EMBL:EEA91401.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L3_063_250G2_scaffold_310_5
unknown

Not on your lists

4506..4994
DNA (489bp) protein (163aa)

This feature has no annotations

L3_063_250G2_scaffold_310_6
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(4906..7152)
DNA (2247bp) protein (749aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
NAD-dependent DNA ligase (EC:6.5.1.2)
DNA ligase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FA52_9ACTN
L3_063_250G2_scaffold_310_7
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8234..8461)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8I3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA91411.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
L3_063_250G2_scaffold_310_8
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8474..9070)
DNA (597bp) protein (199aa)
Putative electron transport complex protein RnfA n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8I2_9ACTN
Putative electron transport complex protein RnfA {ECO:0000313|EMBL:EEA91410.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
RnfABCDGE type electron transport complex subunit A
L3_063_250G2_scaffold_310_9
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9070..9729)
DNA (660bp) protein (220aa)
Putative electron transport complex RsxE subunit n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FA59_9ACTN
Putative electron transport complex RsxE subunit {ECO:0000313|EMBL:EEP44368.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
rnfE; electron transport complex protein
L3_063_250G2_scaffold_310_10
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9729..10322)
DNA (594bp) protein (198aa)
FMN-binding domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8I0_9ACTN
FMN-binding domain protein {ECO:0000313|EMBL:EEA91408.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
RnfABCDGE type electron transport complex subunit G
L3_063_250G2_scaffold_310_11
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10309..11241)
DNA (933bp) protein (311aa)
Electron transport complex, RnfABCDGE type, D subunit n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8H9_9ACTN
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
RnfABCDGE type electron transport complex subunit D
L3_063_250G2_scaffold_310_12
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(11245..12606)
DNA (1362bp) protein (454aa)
Electron transport complex, RnfABCDGE type, C subunit n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FA62_9ACTN
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
RnfABCDGE type electron transport complex subunit C
L3_063_250G2_scaffold_310_13
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12785..13162)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8H5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA91417.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L3_063_250G2_scaffold_310_14
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(13175..14254)
DNA (1080bp) protein (360aa)
Ribosome-binding ATPase YchF n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8H4_9ACTN
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
GTP-binding protein YchF
L3_063_250G2_scaffold_310_15
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(14688..15953)
DNA (1266bp) protein (422aa)
4Fe-4S binding domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8F6_9ACTN
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEA91449.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
L3_063_250G2_scaffold_310_16
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16095..16757)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8F5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA91448.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L3_063_250G2_scaffold_310_17
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16917..18260)
DNA (1344bp) protein (448aa)
malH; maltose-6'-phosphate glucosidase MalH (EC:3.2.1.122)
Maltose-6'-phosphate glucosidase malH n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WKK4_9ACTN
Maltose-6'-phosphate glucosidase malH {ECO:0000313|EMBL:EGX68949.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
L3_063_250G2_scaffold_310_18
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18436..20028)
DNA (1593bp) protein (531aa)
malP; PTS system maltose-specific EIICB component MalP (EC:2.7.1.69)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WKK5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX68950.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
L3_063_250G2_scaffold_310_19
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

20334..21056
DNA (723bp) protein (241aa)
UbiC transcription regulator-associated domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8F0_9ACTN
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:EEA91443.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
transcriptional regulator, GntR family
L3_063_250G2_scaffold_310_20
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21180..22691)
DNA (1512bp) protein (504aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8E9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA91442.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L3_063_250G2_scaffold_310_21
unknown

Not on your lists

comp(22952..23134)
DNA (183bp) protein (61aa)

This feature has no annotations

L3_063_250G2_scaffold_310_22
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23187..26720)
DNA (3534bp) protein (1178aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8E7_9ACTN
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EEA91440.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
alpha-L-arabinofuranosidase
L3_063_250G2_scaffold_310_23
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(27214..28851)
DNA (1638bp) protein (546aa)
60 kDa chaperonin n=2 Tax=Bacteria RepID=G1WKK7_9ACTN
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
chaperonin GroEL
L3_063_250G2_scaffold_310_24
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(28973..29260)
DNA (288bp) protein (96aa)
10 kDa chaperonin n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8H3_9ACTN
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
chaperonin Cpn10
L3_063_250G2_scaffold_310_25
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(29596..31245)
DNA (1650bp) protein (550aa)
Amidohydrolase family protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FCF4_9ACTN
Amidohydrolase family protein {ECO:0000313|EMBL:EEP43520.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
amidohydrolase
L3_063_250G2_scaffold_310_26
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(31845..32654)
DNA (810bp) protein (270aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
Purine-nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FCF5_9ACTN
L3_063_250G2_scaffold_310_27
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(32843..33952)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8G8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA91432.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L3_063_250G2_scaffold_310_28
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(34216..35301)
DNA (1086bp) protein (362aa)
Putative isocitrate dehydrogenase, NAD-dependent n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FCF8_9ACTN
Putative isocitrate dehydrogenase, NAD-dependent {ECO:0000313|EMBL:EEP43524.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
isocitrate dehydrogenase
L3_063_250G2_scaffold_310_29
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(35305..36000)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8G5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA91429.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L3_063_250G2_scaffold_310_30
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(36060..36476)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8G4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA91428.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
Displaying items 1-30 of 49 in total

View Taxonomy