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L3_063_250G2_scaffold_595

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_250G2_scaffold_595_1
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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3..728
DNA (726bp) protein (242aa)
Putative agmatine deiminase {ECO:0000256|HAMAP-Rule:MF_01841}; EC=3.5.3.12 {ECO:0000256|HAMAP-Rule:MF_01841};; Agmatine iminohydrolase {ECO:0000256|HAMAP-Rule:MF_01841}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Putative agmatine deiminase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZEV8_9ACTN
agmatine deiminase
L3_063_250G2_scaffold_595_2
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

1179..2141
DNA (963bp) protein (321aa)
carbamate kinase (EC:2.7.2.2)
Carbamate kinase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GD91_9ACTN
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
L3_063_250G2_scaffold_595_3
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2588..3625)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GD88_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA89750.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L3_063_250G2_scaffold_595_4
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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4440..5885
DNA (1446bp) protein (482aa)
Amino acid permease n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAQ6_9ACTN
Amino acid permease {ECO:0000313|EMBL:EEP44190.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
amino acid permease-associated protein
L3_063_250G2_scaffold_595_5
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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6048..7325
DNA (1278bp) protein (426aa)
Amidohydrolase family protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GD85_9ACTN
Amidohydrolase family protein {ECO:0000313|EMBL:EEA89747.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
amidohydrolase
L3_063_250G2_scaffold_595_6
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

7538..8968
DNA (1431bp) protein (477aa)
signal transduction histidine kinase LytS (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GD83_9ACTN
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EEA89745.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
L3_063_250G2_scaffold_595_7
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

9088..9828
DNA (741bp) protein (247aa)
Response regulator receiver domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GD81_9ACTN
Response regulator receiver domain protein {ECO:0000313|EMBL:EEA89782.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
LytTR family two component transcriptional regulator
L3_063_250G2_scaffold_595_8
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10029..10682)
DNA (654bp) protein (218aa)
HAD hydrolase, family IA, variant 3 n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA63_9ACTN
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EEA90918.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
HAD-superfamily hydrolase
L3_063_250G2_scaffold_595_9
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10919..11863)
DNA (945bp) protein (315aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GB38_9FIRM
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:EFW04854.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
L3_063_250G2_scaffold_595_10
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11866..12165)
DNA (300bp) protein (100aa)
Beta-lactamase n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GB37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:GAL50347.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_063_250G2_scaffold_595_11
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12169..13554)
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GB36_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW04852.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
hypothetical protein
L3_063_250G2_scaffold_595_12
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13767..14792
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KHM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN32797.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
Transcriptional regulators
L3_063_250G2_scaffold_595_13
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14812..15510)
DNA (699bp) protein (233aa)
Uncharacterized protein n=2 Tax=Coprobacillus RepID=E7GB35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW04851.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
YdjC family protein
L3_063_250G2_scaffold_595_14
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15538..16446)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9K4F1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS38342.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
Predicted permeases
L3_063_250G2_scaffold_595_15
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16452..16769)
DNA (318bp) protein (106aa)
Phosphotransferase system cellobiose-specific component IIA (EC:2.7.1.69)
PTS system, Lactose/Cellobiose specific IIA subunit n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GCS0_9ACTN
PTS system, Lactose/Cellobiose specific IIA subunit {ECO:0000313|EMBL:EEA89910.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
L3_063_250G2_scaffold_595_16
unknown

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comp(16797..17006)
DNA (210bp) protein (70aa)

This feature has no annotations

L3_063_250G2_scaffold_595_17
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17035..17790)
DNA (756bp) protein (252aa)
Transcriptional regulator, RpiR family n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CKY1_9ACTN
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:EEE17837.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
RpiR family transcriptional regulator
L3_063_250G2_scaffold_595_18
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17818..19038)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GB33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW04849.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
hypothetical protein
L3_063_250G2_scaffold_595_19
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

19268..20569
DNA (1302bp) protein (434aa)
PTS system protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GB34_9FIRM
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
PTS system lactose/cellobiose family transporter subunit IIC
L3_063_250G2_scaffold_595_20
Erysipelothrix rhusiopathiae, Erysipelothrix, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

20633..20971
DNA (339bp) protein (113aa)
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:EFY09147.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EFY09147.1};; TaxID=525280 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix.;" source="Erysipelothrix rhusiopathiae ATCC 19414.;"
PTS lactose transporter subunit IIB n=1 Tax=Erysipelothrix tonsillarum RepID=UPI00036FA5D6
PTS system lactose/cellobiose-specific transporter subunit IIB
L3_063_250G2_scaffold_595_21
Olsenella uli, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

21145..22824
DNA (1680bp) protein (560aa)
Carboxylic ester hydrolase; EC=3.1.1.-;; TaxID=1190621 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella uli MSTE5.;"
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JSS1_9CLOT
carboxylesterase type B
L3_063_250G2_scaffold_595_22
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23061..23969)
DNA (909bp) protein (303aa)
Putative peptidoglycan binding domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA65_9ACTN
Putative peptidoglycan binding domain protein {ECO:0000313|EMBL:EEA90920.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
peptidoglycan-binding domain 1 protein
L3_063_250G2_scaffold_595_23
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(24245..24565)
DNA (321bp) protein (107aa)
Thioredoxin n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA66_9ACTN
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
thioredoxin
L3_063_250G2_scaffold_595_24
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

24722..25309
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA67_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA90922.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L3_063_250G2_scaffold_595_25
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

25424..26401
DNA (978bp) protein (326aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
Quinolinate synthetase complex, A subunit n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA68_9ACTN
quinolinate synthetase A
L3_063_250G2_scaffold_595_26
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

26412..27797
DNA (1386bp) protein (462aa)
Aspartate oxidase (EC:1.4.3.16)
FAD binding domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA69_9ACTN
FAD binding domain protein {ECO:0000313|EMBL:EEA90924.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
L3_063_250G2_scaffold_595_27
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

27908..28744
DNA (837bp) protein (279aa)
Nicotinate-nucleotide diphosphorylase (Carboxylating) {ECO:0000313|EMBL:EEA90925.1}; EC=2.4.2.19 {ECO:0000313|EMBL:EEA90925.1};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
Nicotinate-nucleotide diphosphorylase (Carboxylating) n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA70_9ACTN
nicotinate-nucleotide pyrophosphorylase
L3_063_250G2_scaffold_595_28
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

28801..29358
DNA (558bp) protein (186aa)
HTH domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA71_9ACTN
HTH domain protein {ECO:0000313|EMBL:EEA90926.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L3_063_250G2_scaffold_595_29
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30093..30890
DNA (798bp) protein (266aa)
Phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIC n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5T8M0_9CLOT
Phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIC {ECO:0000313|EMBL:CCZ62180.1}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
L3_063_250G2_scaffold_595_30
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

30911..31792
DNA (882bp) protein (294aa)
PTS system mannose/fructose/sorbose family IID component n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZPH9_9ACTN
PTS system mannose/fructose/sorbose family IID component {ECO:0000313|EMBL:CDA36291.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
PTS system mannose/fructose/sorbose family transporter subunit IID
Displaying items 1-30 of 34 in total

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