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L3_063_250G2_scaffold_864

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_250G2_scaffold_864_1
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2..388)
DNA (387bp) protein (129aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
Phosphodiesterase family protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D109_9ACTN
phosphodiesterase, MJ0936 family
L3_063_250G2_scaffold_864_2
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(895..2097)
DNA (1203bp) protein (401aa)
TIGR00299 family protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA11_9ACTN
UPF0272 protein COLSTE_00902 {ECO:0000256|HAMAP-Rule:MF_01074}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L3_063_250G2_scaffold_864_3
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2097..2861)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAM6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEP44160.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
L3_063_250G2_scaffold_864_4
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3013..3372)
DNA (360bp) protein (120aa)
Transcriptional regulator, Spx/MgsR family n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAM7_9ACTN
Transcriptional regulator, Spx/MgsR family {ECO:0000313|EMBL:EEP44161.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_063_250G2_scaffold_864_5
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

3439..3999
DNA (561bp) protein (187aa)
Predicted membrane protein (EC:2.5.1.30)
Heptaprenyl diphosphate synthase component I n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAM8_9ACTN
Heptaprenyl diphosphate synthase component I {ECO:0000313|EMBL:EEP44162.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
L3_063_250G2_scaffold_864_6
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

3992..5029
DNA (1038bp) protein (346aa)
Tat pathway signal sequence domain protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAM9_9ACTN
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EEP44163.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
thiamine biosynthesis lipoprotein
L3_063_250G2_scaffold_864_7
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5260..5598)
DNA (339bp) protein (113aa)
PTS system, lactose-specific IIa component n=2 Tax=Collinsella RepID=A4E8Z1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74243.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
PTS system, lactose-specific IIA component
L3_063_250G2_scaffold_864_8
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5608..6288)
DNA (681bp) protein (227aa)
Transcriptional regulator, GntR family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8X6_9ACTN
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EBA39721.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
GntR family transcriptional regulator
L3_063_250G2_scaffold_864_9
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6402..7325)
DNA (924bp) protein (308aa)
Uncharacterized protein n=2 Tax=Collinsella RepID=R5Z8A3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35095.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
PEP phosphonomutase family protein
L3_063_250G2_scaffold_864_10
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

7598..9238
DNA (1641bp) protein (547aa)
lacE; PTS system lactose-specific transporter subunit IIBC (EC:2.7.1.69)
Putative PTS system lactose-specific IIC component n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZLG9_9ACTN
Putative PTS system lactose-specific IIC component {ECO:0000313|EMBL:CDA35096.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
L3_063_250G2_scaffold_864_11
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9364..10314)
DNA (951bp) protein (317aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9Z3_9ACTN
L3_063_250G2_scaffold_864_12
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

10604..11149
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9Z1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA90846.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
membrane protein
L3_063_250G2_scaffold_864_13
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

11107..12783
DNA (1677bp) protein (559aa)
Cobalt ABC transporter, ATP-binding protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9Z0_9ACTN
Cobalt ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEA90845.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
ABC transporter
L3_063_250G2_scaffold_864_14
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

12767..13567
DNA (801bp) protein (267aa)
Cobalt transport protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9Y9_9ACTN
Cobalt transport protein {ECO:0000313|EMBL:EEA90844.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
cobalt transport protein
L3_063_250G2_scaffold_864_15
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

13703..14926
DNA (1224bp) protein (408aa)
Tat pathway signal sequence domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9Y8_9ACTN
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EEA90843.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L3_063_250G2_scaffold_864_16
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

15089..16144
DNA (1056bp) protein (352aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EEA90841.1}; EC=5.1.3.2 {ECO:0000313|EMBL:EEA90841.1};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
UDP-galactose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9Y6_9ACTN
L3_063_250G2_scaffold_864_17
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

16299..17366
DNA (1068bp) protein (356aa)
geranylgeranylglyceryl diphosphate synthase (EC:2.5.1.10 2.5.1.29)
Polyprenyl synthetase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9Y5_9ACTN
Polyprenyl synthetase {ECO:0000313|EMBL:EEA90840.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
L3_063_250G2_scaffold_864_18
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17412..18305)
DNA (894bp) protein (298aa)
SNARE-like domain protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAP1_9ACTN
SNARE-like domain protein {ECO:0000313|EMBL:EEP44175.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_063_250G2_scaffold_864_19
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18483..20291)
DNA (1809bp) protein (603aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAP2_9ACTN
histidine kinase
L3_063_250G2_scaffold_864_20
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20288..21022)
DNA (735bp) protein (245aa)
Response regulator receiver domain protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAP3_9ACTN
Response regulator receiver domain protein {ECO:0000313|EMBL:EEP44177.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_063_250G2_scaffold_864_21
Olsenella profusa, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

21442..22305
DNA (864bp) protein (288aa)
PRD domain protein n=1 Tax=Olsenella profusa F0195 RepID=U2USB6_9ACTN
PRD domain protein {ECO:0000313|EMBL:ERL06017.1}; TaxID=1125712 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella profusa F0195.;"
beta-glucoside operon antiterminator
L3_063_250G2_scaffold_864_22
Streptococcus gallolyticus, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22449..23879
DNA (1431bp) protein (477aa)
bglP2; PTS system beta-glucosides-specific transporter subunit IIA (EC:2.7.1.69)
PTS system, beta-glucosides-specific IIBC component {ECO:0000313|EMBL:BAK28478.1}; EC=2.7.1.69 {ECO:0000313|EMBL:BAK28478.1};; TaxID=981539 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus gallolyticus (strain ATCC 43143 / F-1867).;"
PTS system, beta-glucosides-specific IIA component n=1 Tax=Streptococcus gallolyticus (strain ATCC BAA-2069) RepID=F0VSP9_STRG2
L3_063_250G2_scaffold_864_23
Atopobium sp. oral taxon 810, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

23990..24844
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Atopobium sp. oral taxon 810 str. F0209 RepID=U1Y2G2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:ERI05116.1}; TaxID=1321773 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. oral taxon 810 str. F0209.;"
hypothetical protein
L3_063_250G2_scaffold_864_24
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

25143..25391
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9Y1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA90836.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L3_063_250G2_scaffold_864_25
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

25394..25909
DNA (516bp) protein (172aa)
Putative nickel-responsive regulator n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9Y0_9ACTN
Putative nickel-responsive regulator {ECO:0000256|HAMAP-Rule:MF_00476}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
transcriptional regulator, CopG family
L3_063_250G2_scaffold_864_26
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

25976..28576
DNA (2601bp) protein (867aa)
Carbamoyltransferase HypF n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EA36_9ACTN
Carbamoyltransferase HypF {ECO:0000313|EMBL:EBA39704.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
(NiFe) hydrogenase maturation protein HypF
L3_063_250G2_scaffold_864_27
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

28659..28898
DNA (240bp) protein (80aa)
Hydrogenase assembly chaperone HypC/HupF n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WID2_9ACTN
Hydrogenase assembly chaperone HypC/HupF {ECO:0000313|EMBL:EGX71195.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
HypC; hydrogenase maturation factor
L3_063_250G2_scaffold_864_28
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

28895..30019
DNA (1125bp) protein (375aa)
Hydrogenase expression/formation protein HypD n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9X3_9ACTN
Hydrogenase expression/formation protein HypD {ECO:0000313|EMBL:EEA90828.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hydrogenase expression/formation protein HypD
L3_063_250G2_scaffold_864_29
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

30035..31144
DNA (1110bp) protein (370aa)
Hydrogenase expression/formation protein HypE n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9X2_9ACTN
Hydrogenase expression/formation protein HypE {ECO:0000313|EMBL:EEA90827.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hydrogenase expression/formation protein HypE
L3_063_250G2_scaffold_864_30
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(31294..33135)
DNA (1842bp) protein (614aa)
Putative ATP synthase F0, A subunit n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FC01_9ACTN
Putative ATP synthase F0, A subunit {ECO:0000313|EMBL:EEP43700.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
carbon starvation protein CstA
Displaying 30 items

View Taxonomy