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L3_063_368G1_scaffold_53

Search features with annotation key words

Displaying items 1-30 of 172 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_368G1_scaffold_53_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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184..1017
DNA (834bp) protein (278aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9Q8_9FIRM
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EGJ47086.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_063_368G1_scaffold_53_2
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1083..2390
DNA (1308bp) protein (436aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
Phosphomethylpyrimidine synthase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BCW9_9CLOT
hydroxymethylpyrimidine synthase
L3_063_368G1_scaffold_53_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2754..3482
DNA (729bp) protein (243aa)
Fe-S cluster assembly ATP-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE2_9FIRM
Fe-S cluster assembly ATP-binding protein {ECO:0000313|EMBL:EGJ46838.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ABC-type transport system involved in Fe-S cluster assembly, ATPase component
L3_063_368G1_scaffold_53_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3498..4415
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46839.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
SufBD protein
L3_063_368G1_scaffold_53_5
unknown

Not on your lists

4513..5016
DNA (504bp) protein (168aa)

This feature has no annotations

L3_063_368G1_scaffold_53_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5020..6675
DNA (1656bp) protein (552aa)
YjeF family domain-containing protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE4_9FIRM
YjeF family domain-containing protein {ECO:0000313|EMBL:EGJ46840.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
carbohydrate kinase
L3_063_368G1_scaffold_53_7
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

6693..7286
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YDH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13617.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_063_368G1_scaffold_53_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7297..8439
DNA (1143bp) protein (381aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE6_9FIRM
L3_063_368G1_scaffold_53_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8640..9008
DNA (369bp) protein (123aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
mRNA interferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE7_9FIRM
endoribonuclease
L3_063_368G1_scaffold_53_10
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

9113..9649
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZGT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13620.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_063_368G1_scaffold_53_11
unknown

Not on your lists

9816..10001
DNA (186bp) protein (62aa)

This feature has no annotations

L3_063_368G1_scaffold_53_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10217..11455)
DNA (1239bp) protein (413aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dinB; DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCV5_9FIRM
L3_063_368G1_scaffold_53_13
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

11586..12473
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YDG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13226.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
radical SAM protein
L3_063_368G1_scaffold_53_14
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12502..12984
DNA (483bp) protein (161aa)
Glyoxalase family protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBB8_9FIRM
Glyoxalase family protein {ECO:0000313|EMBL:EDS11448.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
glyoxalase
L3_063_368G1_scaffold_53_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13159..13578
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46650.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_063_368G1_scaffold_53_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13856..15055
DNA (1200bp) protein (400aa)
Sodium/glutamate symporter n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCV0_9FIRM
Sodium/glutamate symporter {ECO:0000313|EMBL:EGJ46646.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
sodium--glutamate symport carrier (gltS)
L3_063_368G1_scaffold_53_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15281..15865)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46647.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_063_368G1_scaffold_53_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15867..16379)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCV2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46648.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_063_368G1_scaffold_53_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16463..17221)
DNA (759bp) protein (253aa)
Hydrolase, alpha/beta domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H704_9FIRM
Hydrolase, alpha/beta domain protein {ECO:0000313|EMBL:EEU96334.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
L3_063_368G1_scaffold_53_20
unknown

Not on your lists

comp(17279..17629)
DNA (351bp) protein (117aa)

This feature has no annotations

L3_063_368G1_scaffold_53_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17816..18403)
DNA (588bp) protein (196aa)
Dipicolinic acid synthetase, B subunit n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEU2_9FIRM
Dipicolinic acid synthetase, B subunit {ECO:0000313|EMBL:EGJ45962.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
spoVFB; dipicolinate synthase subunit B
L3_063_368G1_scaffold_53_22
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(18427..19305)
DNA (879bp) protein (293aa)
Dipicolinic acid synthetase, A subunit n=1 Tax=Firmicutes bacterium ASF500 RepID=V2Y7F0_9FIRM
Dipicolinic acid synthetase, A subunit {ECO:0000313|EMBL:ESL12338.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
shikimate/quinate 5-dehydrogenase
L3_063_368G1_scaffold_53_23
unknown

Not on your lists

19569..19808
DNA (240bp) protein (80aa)

This feature has no annotations

L3_063_368G1_scaffold_53_24
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20820..22547)
DNA (1728bp) protein (576aa)
PAS domain S-box protein (Fragment) n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D2A0_9CLOT
PAS domain S-box protein {ECO:0000313|EMBL:EEG54543.1}; Flags: Fragment;; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
hypothetical protein
L3_063_368G1_scaffold_53_25
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22581..23918)
DNA (1338bp) protein (446aa)
PAS domain S-box protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K6J0_9FIRM
PAS domain S-box protein {ECO:0000313|EMBL:EGN41972.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_063_368G1_scaffold_53_26
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24063..24518)
DNA (456bp) protein (152aa)
Response regulator receiver domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PH83_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EDS09331.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
wspR2; two-component response regulator
L3_063_368G1_scaffold_53_27
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24533..24901)
DNA (369bp) protein (123aa)
Hpt domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PH81_9FIRM
Hpt domain protein {ECO:0000313|EMBL:EDS09329.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_063_368G1_scaffold_53_28
unknown

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comp(25427..25591)
DNA (165bp) protein (55aa)

This feature has no annotations

L3_063_368G1_scaffold_53_29
unknown

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25614..25799
DNA (186bp) protein (62aa)

This feature has no annotations

L3_063_368G1_scaffold_53_30
Fusobacterium ulcerans, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(25966..26871)
DNA (906bp) protein (302aa)
PAS domain S-box protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=V9HT83_9FUSO
PAS domain S-box protein {ECO:0000313|EMBL:EFS27489.2}; TaxID=469617 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium ulcerans ATCC 49185.;"
hypothetical protein
Displaying items 1-30 of 172 in total

View Taxonomy