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L3_063_368G1_scaffold_63

Search features with annotation key words

Displaying items 1-30 of 187 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_368G1_scaffold_63_1
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(272..1036)
DNA (765bp) protein (255aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZFY5_9FIRM
L3_063_368G1_scaffold_63_2
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(1203..1466)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YF10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14167.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_063_368G1_scaffold_63_3
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(1479..1664)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YCV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14168.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_063_368G1_scaffold_63_4
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(1685..2353)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XX12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14194.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_063_368G1_scaffold_63_5
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(2372..3001)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HD61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY27473.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
L3_063_368G1_scaffold_63_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3465..5156
DNA (1692bp) protein (564aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
2-isopropylmalate synthase, yeast type (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBM6_9FIRM
L3_063_368G1_scaffold_63_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5436..7874
DNA (2439bp) protein (813aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Phosphoketolase (EC:4.1.2.22)
Probable phosphoketolase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBM5_9FIRM
L3_063_368G1_scaffold_63_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8042..8896)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9U2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47120.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
RpiR family transcriptional regulator
L3_063_368G1_scaffold_63_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8937..10145)
DNA (1209bp) protein (403aa)
N-acylglucosamine 2-epimerase (EC:5.1.3.8)
N-acylglucosamine 2-epimerase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDU9_9FIRM
N-acylglucosamine 2-epimerase {ECO:0000313|EMBL:EGJ46995.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_063_368G1_scaffold_63_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10458..11837
DNA (1380bp) protein (460aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9U0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47118.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_063_368G1_scaffold_63_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11844..12959
DNA (1116bp) protein (372aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
N-acetylglucosamine 6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9T9_9FIRM
L3_063_368G1_scaffold_63_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12981..13706
DNA (726bp) protein (242aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glucosamine-6-phosphate isomerase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9T8_9FIRM
L3_063_368G1_scaffold_63_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13794..14966)
DNA (1173bp) protein (391aa)
Malic enzyme (EC:1.1.1.38)
Malate dehydrogenase (Oxaloacetate-decarboxylating) n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC50_9FIRM
Malate dehydrogenase (Oxaloacetate-decarboxylating) {ECO:0000313|EMBL:EGJ48084.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_063_368G1_scaffold_63_14
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15344..16690
DNA (1347bp) protein (449aa)
Amino acid permease n=2 Tax=Desulfitobacterium hafniense RepID=G9XI24_DESHA
hypothetical protein
Serine/threonine exchanger SteT {ECO:0000313|EMBL:CDX01501.1}; TaxID=49338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (Desulfitobacterium frappieri).;"
L3_063_368G1_scaffold_63_15
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(16906..18588)
DNA (1683bp) protein (561aa)
DNA repair protein RecN n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XUF0_9FIRM
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
recN; DNA repair protein RecN
L3_063_368G1_scaffold_63_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18616..19068)
DNA (453bp) protein (151aa)
Arginine repressor n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBP3_9FIRM
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
argR; arginine repressor
L3_063_368G1_scaffold_63_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19065..19937)
DNA (873bp) protein (291aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ppnK; inorganic polyphosphate/ATP-NAD kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBP2_9FIRM
L3_063_368G1_scaffold_63_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19934..20752)
DNA (819bp) protein (273aa)
23S rRNA (-2'-O)/16S rRNA (-2'-O)-methyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBP1_9FIRM
23S rRNA (-2'-O)/16S rRNA (-2'-O)-methyltransferase {ECO:0000313|EMBL:EGJ47769.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative hemolysin
L3_063_368G1_scaffold_63_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20727..22601)
DNA (1875bp) protein (625aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBP0_9FIRM
L3_063_368G1_scaffold_63_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22653..23117)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47767.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_063_368G1_scaffold_63_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23149..24033)
DNA (885bp) protein (295aa)
polyprenyl diphosphate synthase (EC:2.5.1.-)
Geranylgeranyl diphosphate synthase, type II n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBN8_9FIRM
Geranylgeranyl diphosphate synthase, type II {ECO:0000313|EMBL:EGJ47766.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_063_368G1_scaffold_63_22
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(24035..24268)
DNA (234bp) protein (78aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
xseB; exodeoxyribonuclease 7 small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZFV9_9FIRM
L3_063_368G1_scaffold_63_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24268..25476)
DNA (1209bp) protein (403aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
xseA; exonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBN6_9FIRM
L3_063_368G1_scaffold_63_24
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists


comp(25473..26417)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YCI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13307.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
peptidase M22 glycoprotease
L3_063_368G1_scaffold_63_25
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(26414..26923)
DNA (510bp) protein (170aa)
N utilization substance protein B homolog n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YA87_9FIRM
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
nusB; antitermination protein NusB
L3_063_368G1_scaffold_63_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27092..27634)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9F6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48203.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_063_368G1_scaffold_63_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27896..28513
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9F4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48201.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_063_368G1_scaffold_63_28
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28532..29911
DNA (1380bp) protein (460aa)
NAD-dependent aldehyde dehydrogenases (EC:1.2.1.3 1.2.1.5)
Aldehyde dehydrogenase n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9K565_9FIRM
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
L3_063_368G1_scaffold_63_29
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30118..31629
DNA (1512bp) protein (504aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M4H4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS65601.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
Resolvase domain
L3_063_368G1_scaffold_63_30
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31622..31993
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YRW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM47983.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
Displaying items 1-30 of 187 in total

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