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L3_063_368G1_scaffold_140

Search features with annotation key words

Displaying items 1-30 of 184 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_368G1_scaffold_140_1
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(192..851)
DNA (660bp) protein (220aa)
HAD hydrolase, family IA, variant 3 n=2 Tax=Oscillibacter RepID=U2RUR6_9FIRM
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:ERK59243.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_063_368G1_scaffold_140_2
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(848..1489)
DNA (642bp) protein (214aa)
Thiamine-phosphate synthase {ECO:0000256|RuleBase:RU003826}; EC=2.5.1.3 {ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|RuleBase:RU003826}; Flags: Fragment;; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase (Fragment) n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CXB5_9CLOT
L3_063_368G1_scaffold_140_3
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1476..2300)
DNA (825bp) protein (275aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
Hydroxyethylthiazole kinase, sugar kinase family (EC:2.7.1.50)
Hydroxyethylthiazole kinase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HGI8_9FIRM
L3_063_368G1_scaffold_140_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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3035..3433
DNA (399bp) protein (133aa)
cdd; cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9R0_9FIRM
Cytidine deaminase {ECO:0000313|EMBL:EGJ47088.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_063_368G1_scaffold_140_5
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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3503..3715
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YJF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15717.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_063_368G1_scaffold_140_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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3929..4807
DNA (879bp) protein (293aa)
Phosphate transport system substrate-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCH6_9FIRM
Phosphate transport system substrate-binding protein {ECO:0000313|EMBL:EGJ48287.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)
L3_063_368G1_scaffold_140_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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4966..5880
DNA (915bp) protein (305aa)
Phosphate ABC transporter, permease PstC n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCH5_9FIRM
Phosphate ABC transporter, permease PstC {ECO:0000313|EMBL:EGJ48286.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
pstC; phosphate ABC transporter permease protein
L3_063_368G1_scaffold_140_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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5884..6843
DNA (960bp) protein (320aa)
Phosphate ABC transporter, permease PstA n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCH4_9FIRM
Phosphate ABC transporter, permease PstA {ECO:0000313|EMBL:EGJ48285.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
pstA; phosphate ABC transporter permease protein
L3_063_368G1_scaffold_140_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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6855..7616
DNA (762bp) protein (254aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
pstB; phosphate ABC transporter ATP-binding protein (EC:3.6.3.27)
Phosphate import ATP-binding protein PstB n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCH3_9FIRM
L3_063_368G1_scaffold_140_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7616..8260
DNA (645bp) protein (215aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCH2_9FIRM
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
phoU; phosphate transport system protein PhoU
L3_063_368G1_scaffold_140_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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8304..9002
DNA (699bp) protein (233aa)
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCH1_9FIRM
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP {ECO:0000313|EMBL:EGJ48282.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
OmpR family two-component response regulator
L3_063_368G1_scaffold_140_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8999..10663
DNA (1665bp) protein (555aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative two-component histidine kinase (EC:2.7.13.3)
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCH0_9FIRM
L3_063_368G1_scaffold_140_13
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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10919..11131
DNA (213bp) protein (71aa)
FeoA domain protein n=2 Tax=Oscillibacter RepID=U2QQQ9_9FIRM
FeoA family protein {ECO:0000313|EMBL:KJF41460.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
feoA; ferrous iron transport protein A
L3_063_368G1_scaffold_140_14
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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11146..11367
DNA (222bp) protein (74aa)
FeoA domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NZA6_9FIRM
FeoA domain protein {ECO:0000313|EMBL:EDM98755.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
feoA; ferrous iron transport protein A
L3_063_368G1_scaffold_140_15
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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11429..13639
DNA (2211bp) protein (737aa)
Ferrous iron transporter B n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YG81_9FIRM
Ferrous iron transporter B {ECO:0000313|EMBL:ESL14206.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
ferrous iron transporter FeoB
L3_063_368G1_scaffold_140_16
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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13666..13842
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M3R6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS65709.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_063_368G1_scaffold_140_17
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13893..15725)
DNA (1833bp) protein (611aa)
ATP-dependent DNA helicase, RecQ-like (EC:3.6.1.-)
ATP-dependent DNA helicase RecQ-like n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TKK3_9FIRM
ATP-dependent DNA helicase RecQ-like {ECO:0000313|EMBL:CDC72785.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_063_368G1_scaffold_140_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16061..17368)
DNA (1308bp) protein (436aa)
RNA polymerase sigma factor SigA n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9B0_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
sigA; RNA polymerase sigma factor SigA
L3_063_368G1_scaffold_140_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17365..19128)
DNA (1764bp) protein (588aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dnaG; DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCC2_9FIRM
L3_063_368G1_scaffold_140_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19195..20199)
DNA (1005bp) protein (335aa)
dGTPase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCC1_9FIRM
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
deoxyguanosinetriphosphate triphosphohydrolase
L3_063_368G1_scaffold_140_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20321..21103)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9B5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48162.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_063_368G1_scaffold_140_22
unknown

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21732..21983
DNA (252bp) protein (84aa)

This feature has no annotations

L3_063_368G1_scaffold_140_23
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21944..22450)
DNA (507bp) protein (169aa)
GNAT family acetyltransferase (EC:2.3.1.-)
Acetyltransferase, GNAT family n=2 Tax=Oscillibacter RepID=U2REC3_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ERK66879.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L3_063_368G1_scaffold_140_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22493..23779)
DNA (1287bp) protein (429aa)
GTPase HflX n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9B7_9FIRM
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hlfX; putative GTP-binding protein HflX
L3_063_368G1_scaffold_140_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23839..24336)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YDN5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48165.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L3_063_368G1_scaffold_140_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24471..24674)
DNA (204bp) protein (68aa)
50S ribosomal protein L31 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9B9_9FIRM
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rpmE; 50S ribosomal protein L31
L3_063_368G1_scaffold_140_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24808..28377)
DNA (3570bp) protein (1190aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
addA; ATP-dependent nuclease subunit A (EC:3.6.1.-)
ATP-dependent helicase/nuclease subunit A n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9C0_9FIRM
L3_063_368G1_scaffold_140_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28409..28822)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9C1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48168.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_063_368G1_scaffold_140_29
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(28858..29691)
DNA (834bp) protein (278aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YDR8_9FIRM
hypothetical protein
L3_063_368G1_scaffold_140_30
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29738..30499)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N051_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS76680.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Zn-dependent hydrolase
Displaying items 1-30 of 184 in total

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