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L3_063_368G1_scaffold_253

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Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_368G1_scaffold_253_1
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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198..1202
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MCK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS68769.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Putative phage replication protein RstA
L3_063_368G1_scaffold_253_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1212..1421
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NI05_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ55331.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_063_368G1_scaffold_253_3
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1499..2689
DNA (1191bp) protein (397aa)
Transposase Int-Tn n=3 Tax=Clostridium difficile RepID=T2TIK0_CLODI
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EFP59624.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
Site-specific recombinase XerD
L3_063_368G1_scaffold_253_4
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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3009..4253
DNA (1245bp) protein (415aa)
ATP phosphoribosyltransferase regulatory subunit (EC:2.4.2.17)
ATP phosphoribosyltransferase regulatory subunit n=4 Tax=Clostridiales RepID=E5XEI3_9FIRM
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_063_368G1_scaffold_253_5
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4281..4943
DNA (663bp) protein (221aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00008790}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_01018};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00046302};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
ATP phosphoribosyltransferase catalytic subunit (EC:2.4.2.17)
ATP phosphoribosyltransferase n=5 Tax=Clostridiales RepID=A5KLG8_9FIRM
L3_063_368G1_scaffold_253_6
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4933..6237
DNA (1305bp) protein (435aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase n=5 Tax=Clostridiales RepID=A5KLG9_9FIRM
L3_063_368G1_scaffold_253_7
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6242..6841
DNA (600bp) protein (200aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase n=5 Tax=Clostridiales RepID=A5KLH0_9FIRM
L3_063_368G1_scaffold_253_8
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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6895..8178
DNA (1284bp) protein (428aa)
phosphoribosyl-ATP pyrophosphohydrolase (EC:3.6.1.31 3.5.4.19)
Phosphoribosyl-ATP diphosphatase n=4 Tax=Lachnospiraceae RepID=A5KLH1_9FIRM
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019, ECO:0000256|SAAS:SAAS00015509}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_063_368G1_scaffold_253_9
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8401..8712
DNA (312bp) protein (104aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KLH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26756.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_063_368G1_scaffold_253_10
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9057..10922
DNA (1866bp) protein (622aa)
Radical SAM domain protein n=5 Tax=Clostridiales RepID=A5KLH5_9FIRM
Radical SAM domain-containing protein {ECO:0000313|EMBL:EFV20179.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Fe-S oxidoreductase
L3_063_368G1_scaffold_253_11
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10906..11628
DNA (723bp) protein (241aa)
Radical SAM-linked protein n=5 Tax=Clostridiales RepID=A5KLH6_9FIRM
Radical SAM-linked protein {ECO:0000313|EMBL:EDK24814.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
hypothetical protein
L3_063_368G1_scaffold_253_12
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11661..12875
DNA (1215bp) protein (405aa)
Ribonucleases G and E (EC:3.1.26.-)
Uncharacterized protein n=5 Tax=Clostridiales RepID=R5QK83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG84520.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_063_368G1_scaffold_253_13
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13007..14326
DNA (1320bp) protein (440aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
aspartate kinase (EC:2.7.2.4)
Aspartokinase n=5 Tax=Clostridiales RepID=E5XEJ3_9FIRM
L3_063_368G1_scaffold_253_14
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14467..14886
DNA (420bp) protein (140aa)
CBS domain protein n=4 Tax=Clostridiales RepID=A5KLH9_9FIRM
CBS domain-containing protein {ECO:0000313|EMBL:EFV20183.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
FOG: CBS domain
L3_063_368G1_scaffold_253_15
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14995..15303
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=5 Tax=Clostridiales RepID=A5KLI0_9FIRM
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
LSU ribosomal protein L21P
L3_063_368G1_scaffold_253_16
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15315..15647
DNA (333bp) protein (111aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KLI1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26763.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Predicted ribosomal protein
L3_063_368G1_scaffold_253_17
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15653..15937
DNA (285bp) protein (95aa)
50S ribosomal protein L27 n=5 Tax=Clostridiales RepID=A5KLI2_9FIRM
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
LSU ribosomal protein L27P
L3_063_368G1_scaffold_253_18
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16119..17402
DNA (1284bp) protein (428aa)
GTPase Obg n=3 Tax=Clostridiales RepID=A5KLI3_9FIRM
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454, ECO:0000256|SAAS:SAAS00043060}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Obg family GTPase CgtA
L3_063_368G1_scaffold_253_19
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17459..17752
DNA (294bp) protein (98aa)
RNA-binding protein, YhbY family n=5 Tax=Clostridiales RepID=A5KLI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV20188.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
conserved hypothetical protein TIGR00253
L3_063_368G1_scaffold_253_20
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17749..18366
DNA (618bp) protein (206aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=5 Tax=Clostridiales RepID=A5KLI5_9FIRM
L3_063_368G1_scaffold_253_21
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18440..19012
DNA (573bp) protein (191aa)
Hydrolase, HD family n=5 Tax=Clostridiales RepID=A5KLI6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV20190.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
conserved hypothetical protein TIGR00488
L3_063_368G1_scaffold_253_22
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19009..19362
DNA (354bp) protein (118aa)
Ribosomal silencing factor RsfS n=4 Tax=Clostridiales RepID=E5XEK2_9FIRM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
iojap-related protein
L3_063_368G1_scaffold_253_23
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19483..19806
DNA (324bp) protein (108aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=A5KLI8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26770.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_063_368G1_scaffold_253_24
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19815..20021
DNA (207bp) protein (69aa)
DNA-binding helix-turn-helix protein n=5 Tax=Clostridiales RepID=A5KLI9_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:EFV20193.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Predicted transcriptional regulators
L3_063_368G1_scaffold_253_25
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20202..21788
DNA (1587bp) protein (529aa)
Pyridine nucleotide-disulfide oxidoreductase n=5 Tax=Clostridiales RepID=A5KLJ0_9FIRM
Oxidoreductase {ECO:0000313|EMBL:EFV20194.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Uncharacterized FAD-dependent dehydrogenases
L3_063_368G1_scaffold_253_26
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21890..22591
DNA (702bp) protein (234aa)
DNA repair protein RadC n=5 Tax=Clostridiales RepID=E5XEK6_9FIRM
DNA repair protein RadC {ECO:0000313|EMBL:EFV20195.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
DNA replication and repair protein RadC
L3_063_368G1_scaffold_253_27
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22670..23695
DNA (1026bp) protein (342aa)
Cell shape determining protein, MreB/Mrl family n=6 Tax=root RepID=A5KLJ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG84505.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
Actin-like ATPase involved in cell morphogenesis
L3_063_368G1_scaffold_253_28
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23695..24564
DNA (870bp) protein (290aa)
Cell shape-determining protein MreC n=4 Tax=Lachnospiraceae RepID=A5KLJ3_9FIRM
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
rod shape-determining protein MreC
L3_063_368G1_scaffold_253_29
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24611..25144
DNA (534bp) protein (178aa)
Rod shape-determining protein MreD n=5 Tax=Clostridiales RepID=A5KLJ4_9FIRM
Rod shape-determining protein MreD {ECO:0000313|EMBL:EFV20198.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
rod shape-determining protein MreD
L3_063_368G1_scaffold_253_30
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25137..27992
DNA (2856bp) protein (952aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5R187_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26777.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
pbpA1; penicillin-binding protein PbpA1
Displaying items 1-30 of 88 in total

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