ggKbase home page

L3_063_368G1_scaffold_289

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_368G1_scaffold_289_1
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..1393)
DNA (1392bp) protein (464aa)
Bacterial flagellin n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWY0_9FIRM
Bacterial flagellin {ECO:0000313|EMBL:EHM38107.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
fliC; flagellin
L3_063_368G1_scaffold_289_2
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1681..2085)
DNA (405bp) protein (135aa)
Hemerythrin HHE cation binding domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWY2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55116.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hemerythrin-like metal-binding domain
L3_063_368G1_scaffold_289_3
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2508..2810
DNA (303bp) protein (101aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2D8N0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO21940.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_063_368G1_scaffold_289_4
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2814..3272
DNA (459bp) protein (153aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2C190_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO21939.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_063_368G1_scaffold_289_5
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3284..4903
DNA (1620bp) protein (540aa)
Flagellar hook-associated protein FlgK n=2 Tax=Clostridiales RepID=H1CM90_9FIRM
Flagellar hook-associated protein FlgK {ECO:0000313|EMBL:EHO21938.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
putative flagellar hook-associated protein
L3_063_368G1_scaffold_289_6
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4939..6075
DNA (1137bp) protein (379aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CM89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO21937.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Flagellin and related hook-associated protein-like protein
L3_063_368G1_scaffold_289_7
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6166..6771
DNA (606bp) protein (202aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2DE71_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO21936.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_063_368G1_scaffold_289_8
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6787..7242
DNA (456bp) protein (152aa)
Flagellar assembly factor FliW n=3 Tax=Clostridiales RepID=G9YTU8_9FIRM
Flagellar assembly factor FliW {ECO:0000256|HAMAP-Rule:MF_01185}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
fliW; flagellar assembly factor FliW
L3_063_368G1_scaffold_289_9
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7236..7469
DNA (234bp) protein (78aa)
Carbon storage regulator n=3 Tax=Clostridiales RepID=G9YTU7_9FIRM
Carbon storage regulator {ECO:0000313|EMBL:EHO21934.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
csrA; carbon storage regulator homolog
L3_063_368G1_scaffold_289_10
unknown

Not on your lists

8374..8661
DNA (288bp) protein (96aa)

This feature has no annotations

L3_063_368G1_scaffold_289_11
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8682..9059
DNA (378bp) protein (126aa)
Carbohydrate binding domain protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CGN7_9CLOT
Carbohydrate binding domain protein {ECO:0000313|EMBL:EFE11138.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Carbohydrate binding domain./Collagen triple helix repeat (20 copies).
L3_063_368G1_scaffold_289_12
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

9157..10257
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2Y9E0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13028.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
family 2 glycosyl transferase
L3_063_368G1_scaffold_289_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10334..11650)
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9N6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48362.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Predicted membrane protein
L3_063_368G1_scaffold_289_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11730..12884)
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9N5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48361.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Alanyl-tRNA synthetase
L3_063_368G1_scaffold_289_15
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13074..14147)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NTJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN00761.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_063_368G1_scaffold_289_16
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14388..14846
DNA (459bp) protein (153aa)
Putative RNA polymerase factor sigma n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BDA5_9CLOT
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EHO34424.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
putative RNA polymerase ECF subfamily sigma factor
L3_063_368G1_scaffold_289_17
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

14821..15453
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YG48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14171.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_063_368G1_scaffold_289_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15549..16904)
DNA (1356bp) protein (452aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46994.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative flavoprotein
L3_063_368G1_scaffold_289_19
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17098..18024)
DNA (927bp) protein (309aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Shikimate dehydrogenase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NXH0_9FIRM
shikimate 5-dehydrogenase
L3_063_368G1_scaffold_289_20
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18043..18837)
DNA (795bp) protein (265aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NXG8_9FIRM
L3_063_368G1_scaffold_289_21
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18866..19843)
DNA (978bp) protein (326aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Chorismate synthase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NXG6_9FIRM
chorismate synthase
L3_063_368G1_scaffold_289_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19831..21027)
DNA (1197bp) protein (399aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEF8_9FIRM
L3_063_368G1_scaffold_289_23
unknown

Not on your lists

comp(21118..21267)
DNA (150bp) protein (50aa)

This feature has no annotations

L3_063_368G1_scaffold_289_24
unknown

Not on your lists

comp(21379..22107)
DNA (729bp) protein (243aa)

This feature has no annotations

L3_063_368G1_scaffold_289_25
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

22395..22853
DNA (459bp) protein (153aa)
ribosomal-protein-alanine acetyltransferase (EC:2.3.1.-)
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YF27_9FIRM
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:ESL14187.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_063_368G1_scaffold_289_26
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

22840..23469
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5H8Z7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY26170.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
hypothetical protein
L3_063_368G1_scaffold_289_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23466..24476
DNA (1011bp) protein (337aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
gcp; O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCU4_9FIRM
L3_063_368G1_scaffold_289_28
unknown

Not on your lists

24473..24634
DNA (162bp) protein (54aa)

This feature has no annotations

L3_063_368G1_scaffold_289_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25112..25531
DNA (420bp) protein (140aa)
Translation initiation factor IF-3 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCU5_9FIRM
Translation initiation factor IF-3 {ECO:0000256|RuleBase:RU000646}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
infC; translation initiation factor IF-3
L3_063_368G1_scaffold_289_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25550..25759
DNA (210bp) protein (70aa)
50S ribosomal protein L35 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCU6_9FIRM
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
LSU ribosomal protein L35P
Displaying items 1-30 of 88 in total

View Taxonomy