ggKbase home page

L3_063_368G1_scaffold_295

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_368G1_scaffold_295_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

146..1345
DNA (1200bp) protein (400aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77738.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_063_368G1_scaffold_295_2
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1461..2495
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CLA1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78123.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Molybdopterin biosynthesis enzyme
L3_063_368G1_scaffold_295_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2554..3363
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAU9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77736.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted phosphohydrolases
L3_063_368G1_scaffold_295_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3431..4222
DNA (792bp) protein (264aa)
Segregation and condensation protein A n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJI2_9FIRM
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_063_368G1_scaffold_295_5
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4266..4835
DNA (570bp) protein (190aa)
Segregation and condensation protein B n=2 Tax=Ruminococcus RepID=C6JAU7_9FIRM
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
segregation and condensation protein B
L3_063_368G1_scaffold_295_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4854..5648
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CLA5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78128.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_063_368G1_scaffold_295_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5829..7061
DNA (1233bp) protein (411aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJI9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78130.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_063_368G1_scaffold_295_8
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7317..8105
DNA (789bp) protein (263aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CK56_9FIRM
L3_063_368G1_scaffold_295_9
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8257..9165)
DNA (909bp) protein (303aa)
LysR family transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CIT0_9FIRM
LysR family transcriptional regulator {ECO:0000313|EMBL:CDD78134.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
LysR family transcriptional regulator
L3_063_368G1_scaffold_295_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9464..10306
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJB7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78136.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Xylose isomerase-like TIM barrel.
L3_063_368G1_scaffold_295_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10442..12367
DNA (1926bp) protein (642aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CK62_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78137.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
NADH:flavin oxidoreductases, Old Yellow Enzyme family
L3_063_368G1_scaffold_295_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12596..13480
DNA (885bp) protein (295aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CLB4_9FIRM
L3_063_368G1_scaffold_295_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13506..14705
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CIT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78139.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Arabinose efflux permease
L3_063_368G1_scaffold_295_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14985..16343
DNA (1359bp) protein (453aa)
membrane protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002FB276E
Uncharacterized protein {ECO:0000313|EMBL:EES77724.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_063_368G1_scaffold_295_15
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16524..17285)
DNA (762bp) protein (254aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
3-dehydroquinate dehydratase, type I (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJC4_9FIRM
L3_063_368G1_scaffold_295_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17554..18432)
DNA (879bp) protein (293aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Shikimate dehydrogenase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAS4_9FIRM
aroE; shikimate 5-dehydrogenase
L3_063_368G1_scaffold_295_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18469..20469)
DNA (2001bp) protein (667aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77710.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
NADH:flavin oxidoreductases, Old Yellow Enzyme family
L3_063_368G1_scaffold_295_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21132..22568
DNA (1437bp) protein (479aa)
Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) (EC:6.4.1.3)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JAS1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77708.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_063_368G1_scaffold_295_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22583..23335
DNA (753bp) protein (251aa)
Oxaloacetate decarboxylase gamma chain {ECO:0000256|RuleBase:RU004278}; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004278};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Oxaloacetate decarboxylase gamma chain n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAS0_9FIRM
sodium pump decarboxylases, gamma subunit
L3_063_368G1_scaffold_295_20
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23363..23731
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CK73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78147.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Acetyl/propionyl-CoA carboxylase, alpha subunit
L3_063_368G1_scaffold_295_21
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23748..24896
DNA (1149bp) protein (383aa)
sodium ion-translocating decarboxylase, beta subunit (EC:4.1.1.3 4.1.1.70)
Sodium ion-translocating decarboxylase, beta subunit n=2 Tax=Ruminococcus RepID=C6JAR8_9FIRM
Sodium ion-translocating decarboxylase, beta subunit {ECO:0000313|EMBL:EES77705.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_063_368G1_scaffold_295_22
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25039..26451
DNA (1413bp) protein (471aa)
Pyruvate/oxaloacetate carboxyltransferase (EC:4.1.1.3)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JAR7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77704.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_063_368G1_scaffold_295_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26563..28044
DNA (1482bp) protein (494aa)
HI0933 family flavoprotein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAR6_9FIRM
HI0933 family flavoprotein {ECO:0000313|EMBL:EES77703.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
conserved hypothetical protein TIGR00275
L3_063_368G1_scaffold_295_24
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28207..28878
DNA (672bp) protein (224aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAR5_9FIRM
L3_063_368G1_scaffold_295_25
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28897..29775
DNA (879bp) protein (293aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CKJ4_9FIRM
L3_063_368G1_scaffold_295_26
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


29756..30832
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CIJ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77846.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Ribosomal protein S1
L3_063_368G1_scaffold_295_27
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31015..31743
DNA (729bp) protein (243aa)
Capsular polysaccharide biosynthesis protein (EC:3.1.3.48)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77700.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_063_368G1_scaffold_295_28
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31904..32689
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAR2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77699.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Capsular polysaccharide biosynthesis protein
L3_063_368G1_scaffold_295_29
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32711..33421
DNA (711bp) protein (237aa)
Capsular polysaccharide biosynthesis protein Cps4D n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CGM4_9FIRM
Capsular polysaccharide biosynthesis protein Cps4D {ECO:0000313|EMBL:CDD77344.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
capsular exopolysaccharide family
L3_063_368G1_scaffold_295_30
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33485..34447
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAR1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77698.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Displaying items 1-30 of 77 in total

View Taxonomy