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L3_063_368G1_scaffold_330

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_368G1_scaffold_330_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..1519
DNA (1518bp) protein (506aa)
Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:EIJ25134.1}; EC=3.1.21.3 {ECO:0000313|EMBL:EIJ25134.1};; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
Type I site-specific deoxyribonuclease, HsdR family n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B114_BIFLN
hsdR; HsdR-like protein of type I restriction modification system
L3_063_368G1_scaffold_330_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1587..2807)
DNA (1221bp) protein (407aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
S-adenosylmethionine synthase n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R0X2_BIFLM
metK; metk
L3_063_368G1_scaffold_330_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3085..3369)
DNA (285bp) protein (95aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
DNA-directed RNA polymerase subunit omega n=17 Tax=Bifidobacterium RepID=RPOZ_BIFLD
DNA-directed RNA polymerase omega subunit
L3_063_368G1_scaffold_330_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3664..5433
DNA (1770bp) protein (590aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
Dihydroxy-acid dehydratase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZVP2_BIFLJ
dihydroxy-acid dehydratase
L3_063_368G1_scaffold_330_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5525..6511)
DNA (987bp) protein (329aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
Methionyl-tRNA formyltransferase n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I2P5_BIFLN
methionyl-tRNA formyltransferase
L3_063_368G1_scaffold_330_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6535..7239)
DNA (705bp) protein (235aa)
Putative hydrolase n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MV62_BIFL1
hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAJ71656.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_063_368G1_scaffold_330_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7298..9610)
DNA (2313bp) protein (771aa)
Probable primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Probable primosomal protein N n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G3G9_BIFLO
priA; primosome assembly protein PriA
L3_063_368G1_scaffold_330_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9650..10372)
DNA (723bp) protein (241aa)
Phosphoserine phosphatase n=4 Tax=Bifidobacterium longum RepID=B3DRN2_BIFLD
serB2; phosphoserine phosphatase
Phosphoserine phosphatase {ECO:0000313|EMBL:ACD99414.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_063_368G1_scaffold_330_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10423..11121
DNA (699bp) protein (233aa)
SNARE-like domain protein n=1 Tax=Bifidobacterium longum subsp. longum 44B RepID=I3BI03_BIFLN
SNARE-like domain protein {ECO:0000313|EMBL:EIJ30996.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
membrane protein
L3_063_368G1_scaffold_330_10
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11182..12747
DNA (1566bp) protein (522aa)
AAA ATPase forming ring-shaped complexes n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XW07_9BIFI
AAA ATPase forming ring-shaped complexes {ECO:0000256|SAAS:SAAS00017598}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
ATPase AAA
L3_063_368G1_scaffold_330_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12769..14436
DNA (1668bp) protein (556aa)
Proteasome accessory factor PafA2 n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B2Z7_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:ADH00941.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
hypothetical protein
L3_063_368G1_scaffold_330_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14448..15344
DNA (897bp) protein (299aa)
Possible inositol monophosphatase n=15 Tax=Bifidobacterium RepID=Q8G3G4_BIFLO
inositol monophosphatase
Putative inositol monophosphatase {ECO:0000313|EMBL:BAJ71650.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_063_368G1_scaffold_330_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15411..15638
DNA (228bp) protein (76aa)
Prokaryotic ubiquitin-like protein Pup n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EDN3_BIFLI
Ubiquitin-like protein Pup {ECO:0000313|EMBL:EEQ56127.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
L3_063_368G1_scaffold_330_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15638..17098
DNA (1461bp) protein (487aa)
Pup--protein ligase {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320}; EC=6.3.2.n2 {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320};; Proteasome accessory factor A {ECO:0000256|HAMAP-Rule:MF_02111}; Pup-conjugating enzyme {ECO:0000256|HAMAP-Rule:MF_02111}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
Pup--protein ligase n=4 Tax=Bifidobacterium longum RepID=E8MEK5_BIFL2
hypothetical protein
L3_063_368G1_scaffold_330_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17214..17495)
DNA (282bp) protein (94aa)
DNA-binding protein HB1 n=20 Tax=Bifidobacterium RepID=DBH1_BIFLO
hup; DNA-binding protein HU
DNA-binding protein HB1 {ECO:0000313|EMBL:EIJ30978.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_063_368G1_scaffold_330_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17641..20202)
DNA (2562bp) protein (854aa)
Membrane protein, PF03706 family n=5 Tax=Bifidobacterium longum RepID=I3B106_BIFLN
Membrane protein, PF03706 family {ECO:0000313|EMBL:EIJ25142.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
hypothetical protein
L3_063_368G1_scaffold_330_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20343..21779)
DNA (1437bp) protein (479aa)
Adenylosuccinate lyase {ECO:0000313|EMBL:KEY33563.1}; EC=4.3.2.2 {ECO:0000313|EMBL:KEY33563.1};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Adenylosuccinate lyase n=10 Tax=Bifidobacterium RepID=B3DRP1_BIFLD
adenylosuccinate lyase
L3_063_368G1_scaffold_330_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21912..22553
DNA (642bp) protein (214aa)
Uncharacterized protein n=3 Tax=Bifidobacterium longum RepID=Q8G3G0_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN25584.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_063_368G1_scaffold_330_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23321..24925)
DNA (1605bp) protein (535aa)
PGAP1-like domain protein n=1 Tax=Bifidobacterium longum subsp. longum 1-6B RepID=I3B2Z2_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:KEY33566.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
hypothetical protein
L3_063_368G1_scaffold_330_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24922..25269)
DNA (348bp) protein (116aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GPQ8_BIFLS
Uncharacterized protein {ECO:0000313|EMBL:KFI73813.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
L3_063_368G1_scaffold_330_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25512..26141)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EDP3_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:EEQ56137.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
L3_063_368G1_scaffold_330_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26111..27142)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=Q8G3F4_BIFLO
hypothetical protein
von Willebrand factor type A domain protein {ECO:0000313|EMBL:KHD94548.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
L3_063_368G1_scaffold_330_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27139..28197)
DNA (1059bp) protein (353aa)
Von Willebrand factor type A-like protein n=10 Tax=Bifidobacterium RepID=B3DRP9_BIFLD
hypothetical protein
von Willebrand factor A {ECO:0000313|EMBL:KEY21649.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_063_368G1_scaffold_330_24
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28194..28748)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I402_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFV38224.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L3_063_368G1_scaffold_330_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28745..29695)
DNA (951bp) protein (317aa)
Uncharacterized protein n=11 Tax=Bifidobacterium RepID=V6XZR2_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY21651.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_063_368G1_scaffold_330_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29692..30771)
DNA (1080bp) protein (360aa)
Von Willebrand factor type A domain containing membrane protein n=10 Tax=Bifidobacterium RepID=B3DRQ2_BIFLD
Von Willebrand factor type A domain containing membrane protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ67119.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L3_063_368G1_scaffold_330_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30811..31500)
DNA (690bp) protein (230aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
Uracil-DNA glycosylase n=7 Tax=Bifidobacterium RepID=E8MEJ1_BIFL2
uracil-DNA glycosylase
L3_063_368G1_scaffold_330_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31616..32299
DNA (684bp) protein (228aa)
Uncharacterized protein n=13 Tax=Bifidobacterium RepID=B3DRQ4_BIFLD
hypothetical protein
Cell wall integrity and stress response protein 1 {ECO:0000313|EMBL:KHD94543.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
L3_063_368G1_scaffold_330_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32544..32768
DNA (225bp) protein (75aa)
Cold shock protein n=15 Tax=Bifidobacterium RepID=B3DPK3_BIFLD
hypothetical protein
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:EIJ25114.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_063_368G1_scaffold_330_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33006..34631
DNA (1626bp) protein (542aa)
60 kDa chaperonin n=30 Tax=Bacteria RepID=CH60_BIFLD
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
chaperonin GroEL
Displaying items 1-30 of 60 in total

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