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L3_063_368G1_scaffold_424

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_368G1_scaffold_424_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..1135
DNA (1134bp) protein (378aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Threonine--tRNA ligase n=1 Tax=Bifidobacterium longum subsp. longum F8 RepID=D6DDB6_BIFLN
thrS; threonyl-tRNA synthetase
L3_063_368G1_scaffold_424_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1275..1859
DNA (585bp) protein (195aa)
Uncharacterized protein n=11 Tax=Bifidobacterium RepID=Q8G6C1_BIFLO
HIT family hydrolase
HIT family hydrolase {ECO:0000313|EMBL:AIW43797.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_063_368G1_scaffold_424_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1998..2753
DNA (756bp) protein (252aa)
Probable transcriptional regulatory protein BLD_0450 n=14 Tax=Bifidobacterium RepID=Y450_BIFLD
hypothetical protein
Probable transcriptional regulatory protein BN57_1200 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
L3_063_368G1_scaffold_424_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2759..3343
DNA (585bp) protein (195aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
Crossover junction endodeoxyribonuclease RuvC n=9 Tax=Bifidobacterium RepID=RUVC_BIFLD
ruvC; Holliday junction resolvase
L3_063_368G1_scaffold_424_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3401..4027
DNA (627bp) protein (209aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
Holliday junction ATP-dependent DNA helicase RuvA n=9 Tax=Bifidobacterium RepID=RUVA_BIFLD
Holliday junction DNA helicase RuvA
L3_063_368G1_scaffold_424_6
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4027..5091
DNA (1065bp) protein (355aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Holliday junction ATP-dependent DNA helicase RuvB n=5 Tax=Bifidobacterium RepID=RUVB_BIFLO
L3_063_368G1_scaffold_424_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5156..5590
DNA (435bp) protein (145aa)
Preprotein translocase subunit n=14 Tax=Bifidobacterium RepID=B3DRY1_BIFLD
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:CCK35013.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
hypothetical protein
L3_063_368G1_scaffold_424_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5654..6235
DNA (582bp) protein (194aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Adenine phosphoribosyltransferase n=17 Tax=Bifidobacterium RepID=APT_BIFLD
adenine phosphoribosyltransferase
L3_063_368G1_scaffold_424_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6332..7534
DNA (1203bp) protein (401aa)
Succinyl-CoA synthetase beta subunit n=18 Tax=Bifidobacterium RepID=B3DRY3_BIFLD
sucC; succ
Succinyl-CoA synthetase beta chain {ECO:0000313|EMBL:AAN24549.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_063_368G1_scaffold_424_10
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7534..8445
DNA (912bp) protein (304aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Succinyl-CoA ligase [ADP-forming] subunit alpha n=17 Tax=Bifidobacterium RepID=B3DRY4_BIFLD
succinyl-CoA synthase subunit alpha
L3_063_368G1_scaffold_424_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8465..9844
DNA (1380bp) protein (460aa)
Permease n=1 Tax=Bifidobacterium longum D2957 RepID=S3DK29_BIFLN
Putative lipoprotein {ECO:0000313|EMBL:KFI67951.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
L3_063_368G1_scaffold_424_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9792..11429
DNA (1638bp) protein (546aa)
Bifunctional purine biosynthesis protein PurH {ECO:0000255|HAMAP-Rule:MF_00139}; Includes:; Phosphoribosylaminoimidazolecarboxamide formyltransferase {ECO:0000255|HAMAP-Rule:MF_00139}; EC=2.1.2.3 {ECO:0000255|HAMAP-Rule:MF_00139};; AICAR transformylase {ECO:0000255|HAMAP-Rule:MF_00139}; Includes:; IMP cyclohydrolase {ECO:0000255|HAMAP-Rule:MF_00139}; EC=3.5.4.10 {ECO:0000255|HAMAP-Rule:MF_00139};; ATIC {ECO:0000255|HAMAP-Rule:MF_00139}; IMP synthase {ECO:0000255|HAMAP-Rule:MF_00139}; Inosinicase {ECO:0000255|HAMAP-Rule:MF_00139}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
Bifunctional purine biosynthesis protein PurH n=2 Tax=Bifidobacterium longum RepID=PUR9_BIFLD
purH; purh
L3_063_368G1_scaffold_424_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11575..11877
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DRY7_BIFLD
hypothetical protein
Rod shape-determining protein RodA {ECO:0000313|EMBL:KFI67949.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_063_368G1_scaffold_424_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11776..12744)
DNA (969bp) protein (323aa)
Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) n=6 Tax=Bifidobacterium RepID=D6DDC6_BIFLN
glycerol uptake facilitator protein
Major intrinsic protein {ECO:0000313|EMBL:AIW43786.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_063_368G1_scaffold_424_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12940..13710
DNA (771bp) protein (257aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Pseudouridine synthase n=19 Tax=Bifidobacterium RepID=B3DRY9_BIFLD
pseudouridine synthase
L3_063_368G1_scaffold_424_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13707..15836
DNA (2130bp) protein (710aa)
Bifunctional cytidylate kinase/GTP-binding protein n=5 Tax=Bifidobacterium RepID=F8AQA3_BIFLN
bifunctional cytidylate kinase/GTP-binding protein
GTPase Der {ECO:0000256|SAAS:SAAS00038180}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
L3_063_368G1_scaffold_424_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16191..17720
DNA (1530bp) protein (510aa)
UTP--glucose-1-phosphate uridylyltransferase n=3 Tax=Bifidobacterium longum RepID=I3B1M3_BIFLN
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:AIW43784.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
ugpA; UTP-glucose-1-phosphate uridylyltransferase
L3_063_368G1_scaffold_424_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17860..19773
DNA (1914bp) protein (638aa)
WYL domain protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AY53_BIFLN
WYL domain protein {ECO:0000313|EMBL:EIJ25577.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
hypothetical protein
L3_063_368G1_scaffold_424_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19784..20101
DNA (318bp) protein (106aa)
Uncharacterized protein n=11 Tax=Bifidobacterium RepID=B3DRZ3_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD97912.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_063_368G1_scaffold_424_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20114..22705
DNA (2592bp) protein (864aa)
DEAD/DEAH box helicase n=3 Tax=Bifidobacterium longum RepID=I3B2N4_BIFLN
helicase
DEAD/DEAH box helicase {ECO:0000313|EMBL:KEY33061.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_063_368G1_scaffold_424_21
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22821..23168
DNA (348bp) protein (116aa)
RNA polymerase-binding protein RbpA n=17 Tax=Bifidobacterium RepID=B3DRZ5_BIFLD
hypothetical protein
RNA polymerase-binding protein RbpA {ECO:0000256|HAMAP-Rule:MF_01483}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L3_063_368G1_scaffold_424_22
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23300..24019
DNA (720bp) protein (240aa)
Predicted phosphatases (EC:3.1.3.18)
Predicted phosphatases n=14 Tax=Bifidobacterium RepID=D6DDD2_BIFLN
Haloacid dehalogenase-like hydrolase {ECO:0000313|EMBL:EFV36751.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L3_063_368G1_scaffold_424_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24043..24297
DNA (255bp) protein (85aa)
Uncharacterized protein n=14 Tax=Bifidobacterium RepID=B3DRZ7_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY21253.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_063_368G1_scaffold_424_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24359..24763)
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum RepID=S3EML8_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHD94131.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
L3_063_368G1_scaffold_424_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24894..25526)
DNA (633bp) protein (211aa)
SoxR-type transcriptional regulator n=10 Tax=Bifidobacterium RepID=B3DRZ9_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEI80248.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_063_368G1_scaffold_424_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25627..26070)
DNA (444bp) protein (148aa)
FHA domain containing protein n=2 Tax=Bifidobacterium RepID=D6ZUD2_BIFLJ
FHA domain containing protein
FHA domain containing protein {ECO:0000313|EMBL:KFI71726.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_063_368G1_scaffold_424_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26077..26898)
DNA (822bp) protein (274aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MTQ0_BIFL1
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ71144.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_063_368G1_scaffold_424_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26914..27246)
DNA (333bp) protein (111aa)
Uncharacterized protein n=19 Tax=Bifidobacterium RepID=B3DS02_BIFLD
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KEY32967.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_063_368G1_scaffold_424_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27246..28223)
DNA (978bp) protein (326aa)
PF05949 family protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B1P9_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:KEY32966.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
hypothetical protein
L3_063_368G1_scaffold_424_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28213..28830)
DNA (618bp) protein (206aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase n=7 Tax=Bifidobacterium RepID=E8MTP7_BIFL1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase {ECO:0000313|EMBL:BAJ71141.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
Displaying items 1-30 of 100 in total

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