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L3_063_368G1_scaffold_630

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Displaying items 1-30 of 39 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_368G1_scaffold_630_1
unknown

Not on your lists

comp(254..532)
DNA (279bp) protein (93aa)

This feature has no annotations

L3_063_368G1_scaffold_630_2
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(517..894)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9M8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA39546.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_063_368G1_scaffold_630_3
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1068..2351)
DNA (1284bp) protein (428aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9M9_9ACTN
L3_063_368G1_scaffold_630_4
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

2463..2636
DNA (174bp) protein (58aa)
Uncharacterized protein n=2 Tax=Collinsella RepID=A4E9N0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA39548.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_063_368G1_scaffold_630_5
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2794..3564)
DNA (771bp) protein (257aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZGB2_9ACTN
L3_063_368G1_scaffold_630_6
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3638..4108)
DNA (471bp) protein (157aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z797_9ACTN
hypothetical protein
L3_063_368G1_scaffold_630_7
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(4115..5053)
DNA (939bp) protein (313aa)
SPFH/Band 7/PHB domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A364_9ACTN
SPFH/Band 7/PHB domain protein {ECO:0000313|EMBL:CDA35557.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_063_368G1_scaffold_630_8
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5758..6675)
DNA (918bp) protein (306aa)
Hydrolase, TatD family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9N5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75635.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
TatD-related deoxyribonuclease
L3_063_368G1_scaffold_630_9
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(6665..7525)
DNA (861bp) protein (287aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9N6_9ACTN
L3_063_368G1_scaffold_630_10
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(7633..9234)
DNA (1602bp) protein (534aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z9P8_9ACTN
L3_063_368G1_scaffold_630_11
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9304..10182)
DNA (879bp) protein (293aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9N8_9ACTN
uroporphyrin-III C/tetrapyrrole methyltransferase
L3_063_368G1_scaffold_630_12
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10189..11250)
DNA (1062bp) protein (354aa)
Putative glucan 1 3-beta-glucosidase n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z793_9ACTN
Putative glucan 1 3-beta-glucosidase {ECO:0000313|EMBL:CDA35553.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
glucan 1,3-beta-glucosidase
L3_063_368G1_scaffold_630_13
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(11974..12213)
DNA (240bp) protein (80aa)
Ribbon-helix-helix protein, CopG family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9P1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75703.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L3_063_368G1_scaffold_630_14
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12297..12656)
DNA (360bp) protein (120aa)
Putative ACR, COG1430 n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9P3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75701.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L3_063_368G1_scaffold_630_15
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12653..13129)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZQJ6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA36631.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_063_368G1_scaffold_630_16
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(13129..15282)
DNA (2154bp) protein (718aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9P5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75699.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L3_063_368G1_scaffold_630_17
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15254..15607)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9P8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA39566.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
TadE family protein
L3_063_368G1_scaffold_630_18
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15726..15944)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZA39_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75697.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L3_063_368G1_scaffold_630_19
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15946..16509)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9Q0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75696.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L3_063_368G1_scaffold_630_20
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16473..16706)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9Q1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75695.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L3_063_368G1_scaffold_630_21
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16717..17358)
DNA (642bp) protein (214aa)
Bacterial type II secretion system domain protein F n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9Q2_9ACTN
Bacterial type II secretion system domain protein F {ECO:0000313|EMBL:EBA39570.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
type II secretion system F domain-containing protein
L3_063_368G1_scaffold_630_22
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17355..18281)
DNA (927bp) protein (309aa)
Bacterial type II secretion system domain protein F n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9Q3_9ACTN
Bacterial type II secretion system domain protein F {ECO:0000313|EMBL:EBA39571.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
type II secretion system F domain-containing protein
L3_063_368G1_scaffold_630_23
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18254..19582)
DNA (1329bp) protein (443aa)
Type II/IV secretion system protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9Q4_9ACTN
Type II/IV secretion system protein {ECO:0000313|EMBL:EBA39572.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
type II secretion system protein E
L3_063_368G1_scaffold_630_24
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(19579..21228)
DNA (1650bp) protein (550aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9Q5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75691.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L3_063_368G1_scaffold_630_25
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21228..21887)
DNA (660bp) protein (220aa)
Putative Flp pilus assembly protein CpaB n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZR65_9ACTN
Putative Flp pilus assembly protein CpaB {ECO:0000313|EMBL:CDA36861.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Flp pilus assembly protein CpaB
L3_063_368G1_scaffold_630_26
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(22140..23324)
DNA (1185bp) protein (395aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZJN4_9ACTN
ribosome small subunit-dependent GTPase A
L3_063_368G1_scaffold_630_27
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23572..26253)
DNA (2682bp) protein (894aa)
Putative potassium/sodium efflux P-type ATPase, fungal-type n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9R0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75688.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
P-type HAD superfamily ATPase
L3_063_368G1_scaffold_630_28
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

26695..28155
DNA (1461bp) protein (487aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9R2_9ACTN
L3_063_368G1_scaffold_630_29
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

28574..29647
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D5B5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75686.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L3_063_368G1_scaffold_630_30
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(29644..30504)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9R3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA39581.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
Displaying items 1-30 of 39 in total

View Taxonomy