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L3_063_368G1_scaffold_1720

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_368G1_scaffold_1720_1
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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2..112
DNA (111bp) protein (37aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
kdpC; high affinity K+-transporting ATPase subunit C (EC:3.6.3.12)
Potassium-transporting ATPase C chain n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F7P5_9ACTN
L3_063_368G1_scaffold_1720_2
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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361..2310
DNA (1950bp) protein (650aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z6M3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75536.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
NADH:flavin oxidoreductases, Old Yellow Enzyme family
L3_063_368G1_scaffold_1720_3
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(2447..2692)
DNA (246bp) protein (82aa)
FCD domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8R5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75537.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
GntR family transcriptional regulator
L3_063_368G1_scaffold_1720_4
Butyrivibrio fibrisolvens, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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2872..4152
DNA (1281bp) protein (427aa)
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen n=1 Tax=Butyrivibrio fibrisolvens 16/4 RepID=D4J1Y3_BUTFI
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen {ECO:0000313|EMBL:CBK74122.1}; TaxID=657324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio fibrisolvens 16/4.;"
L3_063_368G1_scaffold_1720_5
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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4650..5384
DNA (735bp) protein (245aa)
Transcriptional regulator GntR family n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZHZ5_9ACTN
Transcriptional regulator GntR family {ECO:0000313|EMBL:CDA36204.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
transcriptional regulator, GntR family
L3_063_368G1_scaffold_1720_6
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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5461..6531
DNA (1071bp) protein (357aa)
Transcriptional regulator LacI family n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z937_9ACTN
Transcriptional regulator LacI family {ECO:0000313|EMBL:CDA36203.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
LacI family transcriptional regulator
L3_063_368G1_scaffold_1720_7
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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6574..7068
DNA (495bp) protein (165aa)
Addiction module antitoxin, RelB/DinJ family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8Q0_9ACTN
Addiction module antitoxin, RelB/DinJ family {ECO:0000313|EMBL:EBA40266.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
DNA polymerase beta domain-containing protein
L3_063_368G1_scaffold_1720_8
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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7055..7426
DNA (372bp) protein (124aa)
Putative toxin-antitoxin system antitoxin component n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZP96_9ACTN
Putative toxin-antitoxin system antitoxin component {ECO:0000313|EMBL:CDA36201.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_063_368G1_scaffold_1720_9
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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7560..8897
DNA (1338bp) protein (446aa)
Glutamine synthetase, beta-grasp domain protein {ECO:0000313|EMBL:EBA40265.1}; EC=6.3.1.2 {ECO:0000313|EMBL:EBA40265.1};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
L-glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase, beta-grasp domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8P9_9ACTN
L3_063_368G1_scaffold_1720_10
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

8948..9610
DNA (663bp) protein (221aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8P8_9ACTN
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EBA40264.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
two component transcriptional regulator, winged helix family
L3_063_368G1_scaffold_1720_11
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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9819..11279
DNA (1461bp) protein (487aa)
Trypsin n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8P7_9ACTN
Trypsin {ECO:0000313|EMBL:EBA40263.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
peptidase S1 and S6 chymotrypsin/Hap
L3_063_368G1_scaffold_1720_12
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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11729..13957
DNA (2229bp) protein (743aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
NAD-dependent DNA ligase (EC:6.5.1.2)
DNA ligase n=1 Tax=Collinsella sp. CAG:166 RepID=R6A4Y9_9ACTN
L3_063_368G1_scaffold_1720_13
unknown

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comp(14385..14903)
DNA (519bp) protein (173aa)

This feature has no annotations

Displaying 13 items

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