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L3_063_368G1_scaffold_847

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_368G1_scaffold_847_1
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1..99)
DNA (99bp) protein (33aa)
Nucleotidyl transferase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9W3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX68995.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
nucleotidyl transferase
L3_063_368G1_scaffold_847_2
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(350..727)
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9W4_9ACTN
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
50S ribosomal protein L12
L3_063_368G1_scaffold_847_3
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(837..1358)
DNA (522bp) protein (174aa)
50S ribosomal protein L10 n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9W5_9ACTN
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
50S ribosomal protein L10P
L3_063_368G1_scaffold_847_4
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1703..4063)
DNA (2361bp) protein (787aa)
Ferrous iron transport protein B n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9W6_9ACTN
Ferrous iron transport protein B {ECO:0000313|EMBL:EEP44494.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
ferrous iron transport protein B
L3_063_368G1_scaffold_847_5
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(4281..5009)
DNA (729bp) protein (243aa)
Phosphoglycerate mutase family protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9W8_9ACTN
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EEP44496.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
phosphoglycerate mutase family protein
L3_063_368G1_scaffold_847_6
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

5489..6142
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9X1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEP44499.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_063_368G1_scaffold_847_7
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

6347..6625
DNA (279bp) protein (93aa)
Transcriptional regulator, ArsR family n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9X2_9ACTN
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EEP44500.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
transcriptional regulator
L3_063_368G1_scaffold_847_8
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

6615..7376
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9X3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEP44501.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_063_368G1_scaffold_847_9
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(7470..7973)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9X6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEP44285.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
L3_063_368G1_scaffold_847_10
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8044..9309)
DNA (1266bp) protein (422aa)
Transporter, major facilitator family protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9X7_9ACTN
Transporter, major facilitator family protein {ECO:0000313|EMBL:EEP44286.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
ProP; major facilitator superfamily permease
L3_063_368G1_scaffold_847_11
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9498..10292)
DNA (795bp) protein (265aa)
ABC transporter, ATP-binding protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9X8_9ACTN
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEP44287.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
ABC transporter
L3_063_368G1_scaffold_847_12
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10285..11205)
DNA (921bp) protein (307aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9X9_9ACTN
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EEP44288.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
inner-membrane translocator
L3_063_368G1_scaffold_847_13
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(11366..12400)
DNA (1035bp) protein (345aa)
ABC transporter substrate binding protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9Y0_9ACTN
ABC transporter substrate binding protein {ECO:0000313|EMBL:EEP44289.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_063_368G1_scaffold_847_14
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12501..13505)
DNA (1005bp) protein (335aa)
ABC transporter substrate binding protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9Y1_9ACTN
ABC transporter substrate binding protein {ECO:0000313|EMBL:EEP44290.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_063_368G1_scaffold_847_15
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(13858..15261)
DNA (1404bp) protein (468aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
Asparagine--tRNA ligase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9Y2_9ACTN
asparaginyl-tRNA synthase
L3_063_368G1_scaffold_847_16
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

15347..16210
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9Y3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEP44292.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
protein tyrosine/serine phosphatase
L3_063_368G1_scaffold_847_17
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16438..17523)
DNA (1086bp) protein (362aa)
Histidine kinase A domain protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9Y5_9ACTN
Histidine kinase A domain protein {ECO:0000313|EMBL:EEP44294.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
histidine kinase
L3_063_368G1_scaffold_847_18
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17547..18239)
DNA (693bp) protein (231aa)
Response regulator receiver domain protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9Y6_9ACTN
Response regulator receiver domain protein {ECO:0000313|EMBL:EEP44295.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
winged helix family two component transcriptional regulator
L3_063_368G1_scaffold_847_19
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

18531..19382
DNA (852bp) protein (284aa)
Transcriptional regulator, MerR family n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9Y8_9ACTN
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EEP44297.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
Predicted transcriptional regulators
L3_063_368G1_scaffold_847_20
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

19541..20311
DNA (771bp) protein (257aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9Y9_9ACTN
Transporter, small conductance mechanosensitive ion channel MscS family protein {ECO:0000313|EMBL:EEP44298.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
small-conductance mechanosensitive channel
L3_063_368G1_scaffold_847_21
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20330..21034)
DNA (705bp) protein (235aa)
Cell surface protein n=1 Tax=Collinsella sp. CAG:398 RepID=R6ZCB8_9ACTN
Cell surface protein {ECO:0000313|EMBL:CDD41119.1}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
L3_063_368G1_scaffold_847_22
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21006..21947)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Coriobacteriaceae RepID=UPI0003495799
Uncharacterized protein {ECO:0000313|EMBL:EGX69038.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
srtA; sortase (surface protein transpeptidase)
L3_063_368G1_scaffold_847_23
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21960..23564)
DNA (1605bp) protein (535aa)
Possible cell surface protein similar to FimA fimbrial subunit of Actinomyces naeslundii n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G6G6_BIFLO
Cell surface protein {ECO:0000313|EMBL:KFI60407.1}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
fimbrial subunit FimA
L3_063_368G1_scaffold_847_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23645..31228)
DNA (7584bp) protein (2528aa)
Putative cell surface protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WKJ7_BIFBI
Putative cell surface protein {ECO:0000313|EMBL:AFL05410.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
putative cell surface protein
L3_063_368G1_scaffold_847_25
unknown

Not on your lists

comp(31405..31674)
DNA (270bp) protein (90aa)

This feature has no annotations

L3_063_368G1_scaffold_847_26
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(31987..33117)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9Z0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEP44299.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_063_368G1_scaffold_847_27
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(33114..33464)
DNA (351bp) protein (117aa)
Transcriptional regulator, PadR family n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9Z1_9ACTN
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EEP44300.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
PadR family transcriptional regulator
L3_063_368G1_scaffold_847_28
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(33696..34013)
DNA (318bp) protein (106aa)
50S ribosomal protein L1 n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9Z2_9ACTN
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
50S ribosomal protein L1
Displaying 28 items

View Taxonomy