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L3_063_368G1_scaffold_2025

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_368G1_scaffold_2025_1
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..122
DNA (120bp) protein (40aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
DNA-directed RNA polymerase subunit alpha n=4 Tax=Lachnospiraceae RepID=E9RYG3_9FIRM
DNA-directed RNA polymerase subunit alpha
L3_063_368G1_scaffold_2025_2
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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231..767
DNA (537bp) protein (179aa)
50S ribosomal protein L17 n=4 Tax=Lachnospiraceae RepID=E9RYG2_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
LSU ribosomal protein L17P
L3_063_368G1_scaffold_2025_3
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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997..1689
DNA (693bp) protein (231aa)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=E9RYG1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC73716.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_063_368G1_scaffold_2025_4
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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1692..3377
DNA (1686bp) protein (562aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RYG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC73715.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
Membrane-fusion protein
L3_063_368G1_scaffold_2025_5
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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3393..4628
DNA (1236bp) protein (412aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=S2YD91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG89238.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
ABC-type antimicrobial peptide transport system, permease component
L3_063_368G1_scaffold_2025_6
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4722..5114
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YWM0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD62132.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
L3_063_368G1_scaffold_2025_7
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5242..5925)
DNA (684bp) protein (228aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
putativephosphoribosylaminoimidazole-succinocarb oxamidesynthetase (EC:6.3.2.6)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=E9RYF7_9FIRM
L3_063_368G1_scaffold_2025_8
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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6317..6994
DNA (678bp) protein (226aa)
Uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=E9RYF6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC73711.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
transcriptional regulator
L3_063_368G1_scaffold_2025_9
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7045..7890
DNA (846bp) protein (282aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2XZG7_9FIRM
putative sensory transduction histidine kinase
L3_063_368G1_scaffold_2025_10
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8080..8781
DNA (702bp) protein (234aa)
phosphonate-transporting ATPase (EC:3.6.3.28)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2Z0M0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD57604.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
L3_063_368G1_scaffold_2025_11
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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8774..11371
DNA (2598bp) protein (866aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3ANI7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG89232.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
hypothetical protein
L3_063_368G1_scaffold_2025_12
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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11361..11468
DNA (108bp) protein (36aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3ANI6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG89231.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
L3_063_368G1_scaffold_2025_13
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11524..12105
DNA (582bp) protein (194aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=S2XZX5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG89230.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
putative Xre family DNA-binding protein
Displaying 13 items

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