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L3_068_000G1_scaffold_16

Search features with annotation key words

Displaying items 1-30 of 134 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_16_1
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..2612)
DNA (2610bp) protein (870aa)
pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate n=8 Tax=Clostridium RepID=G5I058_9CLOT
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:ENZ19976.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_068_000G1_scaffold_16_2
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3224..3913)
DNA (690bp) protein (230aa)
Two-component system response regulator n=9 Tax=Clostridium RepID=N9WT44_9CLOT
Two-component system response regulator {ECO:0000313|EMBL:ENZ19975.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
winged helix family two component transcriptional regulator
L3_068_000G1_scaffold_16_3
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3885..5405)
DNA (1521bp) protein (507aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
Integral membrane sensor signal transduction histidine kinase n=9 Tax=Clostridium RepID=N9WSL4_9CLOT
integral membrane sensor signal transduction histidine kinase
L3_068_000G1_scaffold_16_4
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5685..6314
DNA (630bp) protein (210aa)
Phosphatidylserine synthase (EC:2.7.8.8)
Phosphatidylserine synthase n=9 Tax=Clostridium RepID=N9W0I0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23405.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
L3_068_000G1_scaffold_16_5
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6337..7227
DNA (891bp) protein (297aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|SAAS:SAAS00093350};; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
Phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase n=6 Tax=Clostridium clostridioforme RepID=N9W014_9CLOT
L3_068_000G1_scaffold_16_6
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7365..8753)
DNA (1389bp) protein (463aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
glycyl-tRNA synthetase, dimeric type (EC:6.1.1.14)
Glycine--tRNA ligase n=9 Tax=Clostridium RepID=G5I053_9CLOT
L3_068_000G1_scaffold_16_7
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8810..9505)
DNA (696bp) protein (232aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9WT51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ66276.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
L3_068_000G1_scaffold_16_8
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9558..10208)
DNA (651bp) protein (217aa)
DNA repair protein RecO n=9 Tax=Clostridium RepID=G5I051_9CLOT
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
DNA repair protein RecO
L3_068_000G1_scaffold_16_9
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10327..11238)
DNA (912bp) protein (304aa)
GTPase Era n=6 Tax=Clostridium clostridioforme RepID=N9W0I3_9CLOT
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
GTP-binding protein Era
L3_068_000G1_scaffold_16_10
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11260..14229)
DNA (2970bp) protein (990aa)
Peptidase n=6 Tax=Clostridium clostridioforme RepID=N9W017_9CLOT
Peptidase {ECO:0000313|EMBL:ENZ66273.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
Peptidase M16C associated domain-containing protein
L3_068_000G1_scaffold_16_11
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14319..15146)
DNA (828bp) protein (276aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9XL19_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ66272.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_068_000G1_scaffold_16_12
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15236..16471)
DNA (1236bp) protein (412aa)
Collagenase and related proteases (EC:3.4.-.-)
Protease n=7 Tax=Clostridium clostridioforme RepID=N9WT59_9CLOT
Protease {ECO:0000313|EMBL:ENZ19965.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_068_000G1_scaffold_16_13
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16468..17127)
DNA (660bp) protein (220aa)
O-methyltransferase n=8 Tax=Clostridium RepID=N9WSM7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23414.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
Predicted O-methyltransferase
L3_068_000G1_scaffold_16_14
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17124..17810)
DNA (687bp) protein (229aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=N9W0I7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23415.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
aminodeoxychorismate lyase
L3_068_000G1_scaffold_16_15
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17905..20016)
DNA (2112bp) protein (704aa)
Ribonuclease J n=9 Tax=Clostridium RepID=N9W020_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23416.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
RNA-metabolising metallo-beta-lactamase
L3_068_000G1_scaffold_16_16
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20044..20328)
DNA (285bp) protein (95aa)
Uncharacterized protein n=10 Tax=Clostridium RepID=N9XL24_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ19961.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L3_068_000G1_scaffold_16_17
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20399..20824)
DNA (426bp) protein (142aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Putative Holliday junction resolvase n=10 Tax=Clostridium RepID=G5I042_9CLOT
conserved hypothetical protein TIGR00250
L3_068_000G1_scaffold_16_18
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21045..21305)
DNA (261bp) protein (87aa)
UPF0297 protein CLOBOL_05779 n=18 Tax=Clostridium RepID=A8S0V2_9CLOT
UPF0297 protein BN688_01913 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
hypothetical protein
L3_068_000G1_scaffold_16_19
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21455..22816)
DNA (1362bp) protein (454aa)
MiaB-like tRNA modifying enzyme (EC:1.3.1.74)
MiaB-like tRNA modifying enzyme n=7 Tax=Clostridium clostridioforme RepID=N9W0J2_9CLOT
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:ENZ66264.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
L3_068_000G1_scaffold_16_20
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23022..23255
DNA (234bp) protein (78aa)
PTS system phosphocarrier protein HPr n=13 Tax=Clostridium RepID=N9W025_9CLOT
PTS system phosphocarrier protein HPr {ECO:0000313|EMBL:ENZ46735.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
PTS HPr component phosphorylation site.
L3_068_000G1_scaffold_16_21
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23392..24576)
DNA (1185bp) protein (395aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Probable tRNA sulfurtransferase n=9 Tax=Clostridium RepID=G5I038_9CLOT
thiamine biosynthesis/tRNA modification protein ThiI
L3_068_000G1_scaffold_16_22
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24644..25798)
DNA (1155bp) protein (385aa)
cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase n=9 Tax=Clostridium RepID=N9WT74_9CLOT
Cysteine desulfurase {ECO:0000313|EMBL:ENZ19955.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_068_000G1_scaffold_16_23
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25812..26561)
DNA (750bp) protein (250aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Ribosomal RNA small subunit methyltransferase E n=9 Tax=Clostridium RepID=G5I036_9CLOT
hypothetical protein
L3_068_000G1_scaffold_16_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26592..27548)
DNA (957bp) protein (319aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=9 Tax=Clostridium RepID=G5I035_9CLOT
L3_068_000G1_scaffold_16_25
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27567..27857)
DNA (291bp) protein (97aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9W029_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ66258.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_068_000G1_scaffold_16_26
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28296..29030)
DNA (735bp) protein (245aa)
Uncharacterized protein n=7 Tax=Clostridium clostridioforme RepID=N9XL32_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ19951.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Glucan-binding domain (YG repeat)-like protein
L3_068_000G1_scaffold_16_27
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29193..30917
DNA (1725bp) protein (575aa)
ABC transporter ATP-binding protein/permease n=9 Tax=Clostridium RepID=N9WT82_9CLOT
ABC transporter ATP-binding protein/permease {ECO:0000313|EMBL:ENZ66256.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
ABC transporter
L3_068_000G1_scaffold_16_28
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30917..32812
DNA (1896bp) protein (632aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R7PCK2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23429.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
ATP-binding cassette subfamily B protein
L3_068_000G1_scaffold_16_29
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32831..33286
DNA (456bp) protein (152aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9W0J9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ66254.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_068_000G1_scaffold_16_30
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33295..34191)
DNA (897bp) protein (299aa)
D-isomer specific 2-hydroxyacid dehydrogenase n=10 Tax=Clostridium RepID=N9W033_9CLOT
D-isomer specific 2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:ENZ19947.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
Displaying items 1-30 of 134 in total

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