ggKbase home page

L3_068_000G1_scaffold_25

Search features with annotation key words

Displaying items 1-30 of 125 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_25_1
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(324..1091)
DNA (768bp) protein (256aa)
Predicted RNA-binding protein n=10 Tax=Lactobacillus rhamnosus RepID=B5QN06_LACRH
R3H domain-containing protein
RNA-binding protein Jag {ECO:0000313|EMBL:AGP75605.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_068_000G1_scaffold_25_2
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1109..1972)
DNA (864bp) protein (288aa)
Membrane protein insertase YidC n=2 Tax=Lactobacillus rhamnosus RepID=C2JTY1_LACRH
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Flags: Precursor;; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
preprotein translocase subunit YidC
L3_068_000G1_scaffold_25_3
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1975..2331)
DNA (357bp) protein (119aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
Ribonuclease P protein component n=9 Tax=Lactobacillus rhamnosus RepID=B5QN79_LACRH
rnpA; ribonuclease P protein component
L3_068_000G1_scaffold_25_4
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(3092..3232)
DNA (141bp) protein (47aa)
50S ribosomal protein L34 n=69 Tax=Lactobacillus RepID=RL34_LACC3
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1051652 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 32G.;"
L3_068_000G1_scaffold_25_5
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3978..5327
DNA (1350bp) protein (450aa)
Chromosomal replication initiator protein DnaA n=6 Tax=Lactobacillus rhamnosus RepID=B5QN77_LACRH
chromosomal replication initiator protein DnaA
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_068_000G1_scaffold_25_6
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5501..6640
DNA (1140bp) protein (380aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
DNA polymerase III subunit beta n=8 Tax=Lactobacillus rhamnosus RepID=C7TF57_LACRL
DNA polymerase III beta subunit
L3_068_000G1_scaffold_25_7
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6749..6931)
DNA (183bp) protein (61aa)
Uncharacterized protein n=4 Tax=Lactobacillus rhamnosus RepID=C7TF58_LACRL
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEN81536.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_068_000G1_scaffold_25_8
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7506..7718
DNA (213bp) protein (71aa)
S4 domain protein YaaA n=11 Tax=Lactobacillus rhamnosus RepID=C7TF59_LACRL
yaaA; S4 domain-containing protein YaaA
Uncharacterized protein {ECO:0000313|EMBL:EKS50044.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_068_000G1_scaffold_25_9
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7715..8833
DNA (1119bp) protein (373aa)
DNA replication and repair protein RecF n=4 Tax=Lactobacillus rhamnosus RepID=C7TF60_LACRL
recF; DNA replication and repair RecF family protein
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_068_000G1_scaffold_25_10
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8865..10826
DNA (1962bp) protein (654aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
DNA gyrase subunit B n=11 Tax=Lactobacillus rhamnosus RepID=C7T8F7_LACRG
gyrB; DNA gyrase subunit B
L3_068_000G1_scaffold_25_11
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


10889..13501
DNA (2613bp) protein (871aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
DNA gyrase subunit A n=5 Tax=Lactobacillus rhamnosus RepID=C7TF62_LACRL
gyrA; DNA gyrase subunit A
L3_068_000G1_scaffold_25_12
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13719..13820
DNA (102bp) protein (34aa)
Conserved protein n=8 Tax=Lactobacillus rhamnosus RepID=C7T8F9_LACRG
hypothetical protein
Single-stranded DNA-binding protein {ECO:0000313|EMBL:EKS50048.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_068_000G1_scaffold_25_13
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13861..14052)
DNA (192bp) protein (64aa)
Uncharacterized protein n=2 Tax=Lactobacillus rhamnosus RepID=C2JTW8_LACRH
Uncharacterized protein {ECO:0000313|EMBL:EEN81530.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
hypothetical protein
L3_068_000G1_scaffold_25_14
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14194..14424
DNA (231bp) protein (77aa)
Conserved protein n=8 Tax=Lactobacillus rhamnosus RepID=C7T8G0_LACRG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKS50049.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_068_000G1_scaffold_25_15
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14519..15031
DNA (513bp) protein (171aa)
Pediocin PapC-like protein n=6 Tax=Lactobacillus rhamnosus RepID=C7TF65_LACRL
papC; pediocin PapC-like protein
Putative bacteriocin transport accessory protein {ECO:0000313|EMBL:EEN81528.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_068_000G1_scaffold_25_16
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15153..15245)
DNA (93bp) protein (31aa)
Deoxyribose-phosphate aldolase n=2 Tax=Lactobacillus rhamnosus RepID=B5QN66_LACRH
Deoxyribose-phosphate aldolase {ECO:0000313|EMBL:KIC96957.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
Deoxyribose-phosphate aldolase
L3_068_000G1_scaffold_25_17
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15355..15786
DNA (432bp) protein (144aa)
Single-stranded DNA-binding protein n=7 Tax=Lactobacillus rhamnosus RepID=C7T8G2_LACRG
ssb1; single-stranded DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_068_000G1_scaffold_25_18
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


15913..16209
DNA (297bp) protein (99aa)
30S ribosomal protein S6 n=13 Tax=Lactobacillus rhamnosus RepID=B5QN64_LACRH
rpsF; 30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_068_000G1_scaffold_25_19
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16239..16829
DNA (591bp) protein (197aa)
Single-stranded DNA-binding protein n=5 Tax=Lactobacillus rhamnosus RepID=C7TF68_LACRL
ssb; single-stranded DNA-binding family protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_068_000G1_scaffold_25_20
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


16921..17157
DNA (237bp) protein (79aa)
30S ribosomal protein S18 n=70 Tax=Lactobacillus RepID=RS18_LACC3
50S ribosomal protein L18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1256225 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp225.;"
L3_068_000G1_scaffold_25_21
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17450..17956)
DNA (507bp) protein (169aa)
4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme, amidase family protein n=11 Tax=Lactobacillus rhamnosus RepID=B5QN61_LACRH
yfkM; general stress protein 18
General stress protein {ECO:0000313|EMBL:KIC96952.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_068_000G1_scaffold_25_22
unknown

Not on your lists

18014..18118
DNA (105bp) protein (35aa)

This feature has no annotations

L3_068_000G1_scaffold_25_23
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18267..19745
DNA (1479bp) protein (493aa)
Bacterial Cytochrome Ubiquinol Oxidase family protein n=4 Tax=Lactobacillus rhamnosus RepID=G7V0R8_LACRH
bacterial Cytochrome Ubiquinol Oxidase family protein
Cytochrome d ubiquinol oxidase subunit I {ECO:0000313|EMBL:AGP72705.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_068_000G1_scaffold_25_24
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19738..20757
DNA (1020bp) protein (340aa)
Cytochrome d ubiquinol oxidase subunit II n=4 Tax=Lactobacillus rhamnosus RepID=C7TF72_LACRL
cydB; cytochrome d ubiquinol oxidase subunit II
Cytochrome d ubiquinol oxidase subunit II {ECO:0000313|EMBL:AGP72706.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_068_000G1_scaffold_25_25
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20797..20991
DNA (195bp) protein (65aa)
Conserved protein n=11 Tax=Lactobacillus rhamnosus RepID=C7TF73_LACRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKS50057.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_068_000G1_scaffold_25_26
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22342..23019
DNA (678bp) protein (226aa)
Abortive infection protein n=5 Tax=Lactobacillus rhamnosus RepID=C7TF75_LACRL
CAAX amino terminal protease self-immunity family protein
Membrane-bound protease, CAAX family {ECO:0000313|EMBL:AGP72709.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_068_000G1_scaffold_25_27
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23295..24047)
DNA (753bp) protein (251aa)
ABC transporter, permease protein n=6 Tax=Lactobacillus rhamnosus RepID=C7TF76_LACRL
ABC transporter permease
ABC transporter {ECO:0000313|EMBL:KIC96946.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_068_000G1_scaffold_25_28
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24070..24978)
DNA (909bp) protein (303aa)
ABC transporter, ATPase component n=4 Tax=Lactobacillus rhamnosus RepID=C7TF77_LACRL
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP72712.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_068_000G1_scaffold_25_29
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25716..26801
DNA (1086bp) protein (362aa)
Ammonium transporter family protein n=4 Tax=Lactobacillus rhamnosus RepID=C7TF78_LACRL
ammonium Transporter family protein
Ammonium transporter family protein {ECO:0000313|EMBL:AGP72713.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_068_000G1_scaffold_25_30
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26819..27928
DNA (1110bp) protein (370aa)
Monooxygenase n=4 Tax=Lactobacillus rhamnosus RepID=C7TF79_LACRL
glucose inhibited division A family protein
Putative monooxygenase {ECO:0000313|EMBL:AGP72714.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Displaying items 1-30 of 125 in total

View Taxonomy