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L3_068_000G1_scaffold_146

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_146_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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359..1408
DNA (1050bp) protein (350aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361, ECO:0000313|EMBL:CBL13546.1};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=4 Tax=Roseburia RepID=D4KTW1_9FIRM
L3_068_000G1_scaffold_146_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1402..2085
DNA (684bp) protein (228aa)
Response regulator receiver domain protein n=2 Tax=Roseburia RepID=C7G5R6_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EEV02798.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_068_000G1_scaffold_146_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2082..3125
DNA (1044bp) protein (348aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G5R5_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EEV02797.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Signal transduction histidine kinase
L3_068_000G1_scaffold_146_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3347..4114
DNA (768bp) protein (256aa)
ABC-type antimicrobial peptide transport system, ATPase component n=3 Tax=Roseburia intestinalis RepID=D4KTW4_9FIRM
ABC-type antimicrobial peptide transport system, ATPase component
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:CBL13548.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_146_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4107..6146
DNA (2040bp) protein (680aa)
Predicted permease n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B2M2_9FIRM
Predicted permease {ECO:0000313|EMBL:CDA55254.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted permease.
L3_068_000G1_scaffold_146_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6304..6939
DNA (636bp) protein (212aa)
HAD superfamily hydrolase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B866_9FIRM
HAD superfamily hydrolase {ECO:0000313|EMBL:CDA55256.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_068_000G1_scaffold_146_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7468..8550
DNA (1083bp) protein (361aa)
Uncharacterized proteins, homologs of microcin C7 resistance protein MccF n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KLS0_9FIRM
Uncharacterized proteins, homologs of microcin C7 resistance protein MccF
Uncharacterized proteins, homologs of microcin C7 resistance protein MccF {ECO:0000313|EMBL:CBL07822.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_146_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8562..9290)
DNA (729bp) protein (243aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KLS1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL07823.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_146_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9427..9885
DNA (459bp) protein (153aa)
Membrane protein implicated in regulation of membrane protease activity n=3 Tax=Roseburia RepID=D4KLS2_9FIRM
Membrane protein implicated in regulation of membrane protease activity
Membrane protein implicated in regulation of membrane protease activity {ECO:0000313|EMBL:CBL07824.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_146_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9888..10739
DNA (852bp) protein (284aa)
Predicted esterase of the alpha-beta hydrolase superfamily n=3 Tax=Roseburia RepID=D4KLS3_9FIRM
Predicted esterase of the alpha-beta hydrolase superfamily
Predicted esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:CDA55885.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_146_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10757..11701
DNA (945bp) protein (315aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EEV02788.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EEV02788.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Lactate dehydrogenase and related dehydrogenases (EC:1.1.1.272)
4-phosphoerythronate dehydrogenase n=2 Tax=Roseburia RepID=C7G5Q6_9FIRM
L3_068_000G1_scaffold_146_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11878..12846)
DNA (969bp) protein (323aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L1W2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL13602.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_146_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13182..14579
DNA (1398bp) protein (466aa)
Predicted Fe-S oxidoreductases n=3 Tax=Roseburia RepID=D4KLS6_9FIRM
Predicted Fe-S oxidoreductases
Radical SAM domain protein {ECO:0000313|EMBL:CDA55888.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_146_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14781..15623
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G5Q3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02785.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Uncharacterised protein family (UPF0104).
L3_068_000G1_scaffold_146_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15778..16710
DNA (933bp) protein (311aa)
Membrane protease subunits, stomatin/prohibitin homologs n=4 Tax=Roseburia RepID=D4KLS8_9FIRM
Membrane protease subunits, stomatin/prohibitin homologs
Membrane protease subunits, stomatin/prohibitin homologs {ECO:0000313|EMBL:CBL13604.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_146_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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16810..17814
DNA (1005bp) protein (335aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=2 Tax=Roseburia RepID=C7G5Q1_9FIRM
L3_068_000G1_scaffold_146_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17844..18821
DNA (978bp) protein (326aa)
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
BirA, biotin-[acetyl-CoA-carboxylase] ligase region n=3 Tax=Roseburia RepID=D4L1W7_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_146_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18814..19155
DNA (342bp) protein (114aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7G5P9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55894.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_146_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19177..19968
DNA (792bp) protein (264aa)
pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Type III pantothenate kinase n=4 Tax=Roseburia RepID=D4KLT0_9FIRM
L3_068_000G1_scaffold_146_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20041..21033
DNA (993bp) protein (331aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
tRNA-dihydrouridine synthase n=2 Tax=Roseburia RepID=D4KLT1_9FIRM
tRNA-U20-dihydrouridine synthase
L3_068_000G1_scaffold_146_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21143..21682
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G5P6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02778.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_068_000G1_scaffold_146_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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21755..22234
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=3 Tax=Roseburia RepID=D4KLT3_9FIRM
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_146_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22293..23789
DNA (1497bp) protein (499aa)
Lysyl-tRNA synthetase (class II) (EC:6.1.1.6)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Lysine--tRNA ligase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L1X2_9FIRM
L3_068_000G1_scaffold_146_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23992..24459
DNA (468bp) protein (156aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=E9SPR4_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ENZ58407.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_068_000G1_scaffold_146_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24459..24638
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A3S7_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ31128.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
L3_068_000G1_scaffold_146_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24668..25450
DNA (783bp) protein (261aa)
Chromosome partitioning protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AG71_CLOBU
Chromosome partitioning protein {ECO:0000313|EMBL:ENZ31127.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
ATPases involved in chromosome partitioning
L3_068_000G1_scaffold_146_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25443..26336
DNA (894bp) protein (298aa)
ParB-like partition protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YU65_CLOBU
ParB-like partition protein {ECO:0000313|EMBL:ENZ31126.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
ParB-like partition proteins
L3_068_000G1_scaffold_146_28
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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26351..27415
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9MMY3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS72395.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Replication initiator protein A (RepA) N-terminus.
L3_068_000G1_scaffold_146_29
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27524..27892
DNA (369bp) protein (123aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=N1ZUR0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS36985.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
hypothetical protein
L3_068_000G1_scaffold_146_30
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27995..28651
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IGF8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS20881.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
hypothetical protein
Displaying items 1-30 of 63 in total

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