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L3_068_000G1_scaffold_215

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_215_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(185..655)
DNA (471bp) protein (157aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.-)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
6,7-dimethyl-8-ribityllumazine synthase n=3 Tax=Roseburia RepID=D4KL10_9FIRM
L3_068_000G1_scaffold_215_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(728..1930)
DNA (1203bp) protein (401aa)
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.99.12)
Riboflavin biosynthesis protein RibBA n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BM29_9FIRM
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_215_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1981..2628)
DNA (648bp) protein (216aa)
Riboflavin synthase alpha subunit n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B642_9FIRM
Riboflavin synthase alpha subunit {ECO:0000313|EMBL:CDA54446.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
riboflavin synthase alpha chain
L3_068_000G1_scaffold_215_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2687..3769)
DNA (1083bp) protein (361aa)
diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=2 Tax=Roseburia RepID=D4KL08_9FIRM
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_215_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4331..7006)
DNA (2676bp) protein (892aa)
EDD domain protein, DegV family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L458_9FIRM
EDD domain protein, DegV family
EDD domain protein, DegV family {ECO:0000313|EMBL:CBL14398.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_215_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6999..9695)
DNA (2697bp) protein (899aa)
Signal transduction histidine kinase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L457_9FIRM
Signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:CBL14397.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_215_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9707..10759)
DNA (1053bp) protein (351aa)
Response regulator containing a CheY-like receiver domain and an HD-GYP domain n=3 Tax=Roseburia RepID=D4KL05_9FIRM
Response regulator containing a CheY-like receiver domain and an HD-GYP domain
Response regulator containing a CheY-like receiver domain and an HD-GYP domain {ECO:0000313|EMBL:CBL07557.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_215_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10799..11962)
DNA (1164bp) protein (388aa)
Cation diffusion facilitator family transporter n=3 Tax=Roseburia RepID=D4L455_9FIRM
cation diffusion facilitator family transporter
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EEV01006.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_068_000G1_scaffold_215_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12041..12718)
DNA (678bp) protein (226aa)
signal peptidase I . Serine peptidase. MEROPS family S26A (EC:3.4.21.89)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Signal peptidase I . Serine peptidase. MEROPS family S26A n=3 Tax=Roseburia RepID=D4L454_9FIRM
L3_068_000G1_scaffold_215_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12906..13838)
DNA (933bp) protein (311aa)
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase A {ECO:0000313|EMBL:EEV01003.1}; EC=2.5.1.47 {ECO:0000313|EMBL:EEV01003.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Cysteine synthase A n=4 Tax=Roseburia RepID=D4KL02_9FIRM
L3_068_000G1_scaffold_215_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13926..15233)
DNA (1308bp) protein (436aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine sulfhydrolase n=3 Tax=Roseburia RepID=D4KL01_9FIRM
O-acetylhomoserine sulfhydrolase {ECO:0000313|EMBL:CDA54435.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_215_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15263..15700)
DNA (438bp) protein (146aa)
FeS cluster assembly scaffold protein NifU, Clostridium type n=4 Tax=Roseburia RepID=D4KL00_9FIRM
FeS cluster assembly scaffold protein NifU, Clostridium type
FeS cluster assembly scaffold protein NifU Clostridium type {ECO:0000313|EMBL:CDA54434.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_215_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15748..16932)
DNA (1185bp) protein (395aa)
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000313|EMBL:CBL14390.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Cysteine desulfurase NifS n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L450_9FIRM
L3_068_000G1_scaffold_215_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17293..18318
DNA (1026bp) protein (342aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L449_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14389.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_215_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18355..19620)
DNA (1266bp) protein (422aa)
Hemolysins and related proteins containing CBS domains n=3 Tax=Roseburia RepID=D4L448_9FIRM
Hemolysins and related proteins containing CBS domains
Hemolysins and related proteins containing CBS domains {ECO:0000313|EMBL:CDA54431.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_215_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19689..19778)
DNA (90bp) protein (30aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6ATS4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL07549.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_215_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20053..20412
DNA (360bp) protein (120aa)
Mn-dependent transcriptional regulator n=4 Tax=Roseburia RepID=D4KKZ6_9FIRM
Mn-dependent transcriptional regulator
Mn-dependent transcriptional regulator {ECO:0000313|EMBL:CBL07548.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_215_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20546..22546)
DNA (2001bp) protein (667aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Isopropylmalate/homocitrate/citramalate synthases (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AR14_9FIRM
L3_068_000G1_scaffold_215_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23067..23612)
DNA (546bp) protein (182aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6BM01_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA54427.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_215_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23730..24161)
DNA (432bp) protein (144aa)
Transcriptional regulator, BadM/Rrf2 family n=4 Tax=Roseburia RepID=D4KKZ3_9FIRM
transcriptional regulator, BadM/Rrf2 family
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:CBL14383.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_215_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24307..24627)
DNA (321bp) protein (107aa)
O-6-methylguanine DNA methyltransferase n=4 Tax=Roseburia RepID=D4KKZ2_9FIRM
O-6-methylguanine DNA methyltransferase
O-6-methylguanine DNA methyltransferase {ECO:0000313|EMBL:CBL14382.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_215_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24812..26482
DNA (1671bp) protein (557aa)
High affinity sulphate transporter 1 n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKZ1_9FIRM
high affinity sulphate transporter 1
High affinity sulphate transporter 1 {ECO:0000313|EMBL:CBL07543.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_215_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26540..26956)
DNA (417bp) protein (139aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GFV5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA54422.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_215_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26943..27425)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99300.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Sporulation and spore germination.
L3_068_000G1_scaffold_215_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27747..28715)
DNA (969bp) protein (323aa)
Multidrug-efflux transporter 2 regulator n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFV7_9FIRM
Multidrug-efflux transporter 2 regulator {ECO:0000313|EMBL:EEU99302.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Predicted transcriptional regulators
L3_068_000G1_scaffold_215_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28717..30045
DNA (1329bp) protein (443aa)
MATE efflux family protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFV8_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EEU99301.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
putative efflux protein, MATE family
L3_068_000G1_scaffold_215_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30036..30446)
DNA (411bp) protein (137aa)
FOG: CBS domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L436_9FIRM
FOG: CBS domain
FOG: CBS domain {ECO:0000313|EMBL:CBL14376.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_215_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30540..30908)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99304.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_068_000G1_scaffold_215_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31319..32677)
DNA (1359bp) protein (453aa)
Glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase n=2 Tax=Roseburia RepID=D4L424_9FIRM
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_215_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32936..34474)
DNA (1539bp) protein (513aa)
Cysteine-rich secretory protein family./Fibronectin type III domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L423_9FIRM
Cysteine-rich secretory protein family./Fibronectin type III domain.
Cysteine-rich secretory protein family./Fibronectin type III domain {ECO:0000313|EMBL:CBL14363.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Displaying items 1-30 of 61 in total

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