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L3_068_000G1_scaffold_276

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_276_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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301..1185
DNA (885bp) protein (295aa)
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KQJ7_9FIRM
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:CBL09149.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_276_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1304..2239)
DNA (936bp) protein (312aa)
Elongation factor Ts n=3 Tax=Roseburia RepID=D4KQJ6_9FIRM
translation elongation factor Ts (EF-Ts)
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_276_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2323..3066)
DNA (744bp) protein (248aa)
30S ribosomal protein S2 n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KQJ5_9FIRM
SSU ribosomal protein S2P
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_276_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3302..3883)
DNA (582bp) protein (194aa)
YceG-like family n=3 Tax=Roseburia RepID=D4KW98_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV00729.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
YceG-like family.
L3_068_000G1_scaffold_276_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3880..4575)
DNA (696bp) protein (232aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GBS7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57705.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_276_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4575..4898)
DNA (324bp) protein (108aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GBS8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57706.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_276_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4923..5687)
DNA (765bp) protein (255aa)
RNA polymerase sigma factor n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KW95_9FIRM
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_276_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5708..5983)
DNA (276bp) protein (92aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GBT0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57708.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_276_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6004..6489)
DNA (486bp) protein (162aa)
Chemotaxis protein; stimulates methylation of MCP proteins (EC:3.5.1.44)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440, ECO:0000313|EMBL:CBL11633.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Probable chemoreceptor glutamine deamidase CheD n=4 Tax=Roseburia RepID=D4KQJ0_9FIRM
L3_068_000G1_scaffold_276_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6502..7122)
DNA (621bp) protein (207aa)
Chemotaxis protein CheC, inhibitor of MCP methylation n=4 Tax=Roseburia RepID=D4KQI9_9FIRM
Chemotaxis protein CheC, inhibitor of MCP methylation
Chemotaxis protein CheC inhibitor of MCP methylation {ECO:0000313|EMBL:CDA57711.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_276_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7204..7650)
DNA (447bp) protein (149aa)
Chemotaxis signal transduction protein n=4 Tax=Roseburia RepID=D4KQI8_9FIRM
Chemotaxis signal transduction protein
Chemotaxis signal transduction protein {ECO:0000313|EMBL:CDA57712.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_276_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7666..9780)
DNA (2115bp) protein (705aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Chemotaxis protein histidine kinase and related kinases (EC:2.7.13.3)
Putative chemotaxis protein CheA n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B0J2_9FIRM
L3_068_000G1_scaffold_276_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9782..10846)
DNA (1065bp) protein (355aa)
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099, ECO:0000313|EMBL:CBL11629.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Chemotaxis response regulator protein-glutamate methylesterase n=4 Tax=Roseburia RepID=D4KQI6_9FIRM
L3_068_000G1_scaffold_276_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10843..11604)
DNA (762bp) protein (254aa)
Type IV pilus assembly protein PilZ n=2 Tax=Roseburia RepID=C7GBT6_9FIRM
Type IV pilus assembly protein PilZ {ECO:0000313|EMBL:EEV00739.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Predicted glycosyltransferase
L3_068_000G1_scaffold_276_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11617..12495)
DNA (879bp) protein (293aa)
Site-determining protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BWZ3_9FIRM
ATPases involved in chromosome partitioning
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_276_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12500..13762)
DNA (1263bp) protein (421aa)
Flagellar biosynthetic protein FlhF n=2 Tax=Roseburia RepID=D4KQI3_9FIRM
Flagellar biosynthesis protein FlhF {ECO:0000313|EMBL:EEV00741.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
flagellar biosynthetic protein FlhF
L3_068_000G1_scaffold_276_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13752..15797)
DNA (2046bp) protein (682aa)
Flagellar biosynthesis protein FlhA n=3 Tax=Roseburia RepID=D4KQI2_9FIRM
flagellar biosynthesis protein FlhA
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:CDA57719.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_276_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15794..16933)
DNA (1140bp) protein (380aa)
Flagellar biosynthetic protein FlhB n=2 Tax=Roseburia RepID=C7GBU1_9FIRM
Flagellar biosynthetic protein FlhB {ECO:0000313|EMBL:CDA57720.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
flagellar biosynthetic protein FlhB
L3_068_000G1_scaffold_276_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16935..17714)
DNA (780bp) protein (260aa)
Flagellar biosynthetic protein fliR n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GBU2_9FIRM
Flagellar biosynthetic protein fliR {ECO:0000256|RuleBase:RU003842}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
flagellar biosynthetic protein FliR
L3_068_000G1_scaffold_276_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17723..17992)
DNA (270bp) protein (90aa)
Flagellar biosynthetic protein FliQ n=4 Tax=Roseburia RepID=D4KQI0_9FIRM
flagellar biosynthetic protein FliQ
Flagellar biosynthetic protein FliQ {ECO:0000313|EMBL:CBL09132.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_276_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18076..18975)
DNA (900bp) protein (300aa)
Flagellar biosynthetic protein FliP n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GBU4_9FIRM
Flagellar biosynthetic protein FliP {ECO:0000313|EMBL:EEV00588.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
flagellar biosynthetic protein FliP
L3_068_000G1_scaffold_276_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18983..19354)
DNA (372bp) protein (124aa)
Flagellar biosynthesis protein, FliO n=3 Tax=Roseburia RepID=D4KW81_9FIRM
Flagellar biosynthesis protein FliO {ECO:0000313|EMBL:CDA57726.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Flagellar biosynthesis protein, FliO.
L3_068_000G1_scaffold_276_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19356..19715)
DNA (360bp) protein (120aa)
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain n=4 Tax=Roseburia RepID=D4KQH7_9FIRM
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain {ECO:0000313|EMBL:CBL09129.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_276_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19754..20932)
DNA (1179bp) protein (393aa)
Flagellar motor switch protein FliN n=3 Tax=Roseburia RepID=D4KQH6_9FIRM
flagellar motor switch protein FliN
Flagellar motor switch protein FliN {ECO:0000313|EMBL:CDA57728.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_276_25
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20934..21914)
DNA (981bp) protein (327aa)
Flagellar motor switch protein FliM n=3 Tax=Roseburia RepID=D4KQH5_9FIRM
flagellar motor switch protein FliM
Flagellar motor switch protein FliM {ECO:0000313|EMBL:CDA57729.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_276_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21946..22473)
DNA (528bp) protein (176aa)
Flagellar basal body-associated protein FliL n=2 Tax=Roseburia RepID=C7GBU9_9FIRM
Flagellar basal body-associated protein FliL {ECO:0000313|EMBL:CDA57730.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Flagellar basal body-associated protein FliL.
L3_068_000G1_scaffold_276_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22490..23293)
DNA (804bp) protein (268aa)
OmpA family protein n=2 Tax=Roseburia RepID=C7GBV0_9FIRM
OmpA family protein {ECO:0000313|EMBL:EEV00594.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
chemotaxis protein MotB
L3_068_000G1_scaffold_276_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23293..24087)
DNA (795bp) protein (265aa)
Transporter, MotA/TolQ/ExbB proton channel family protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GBV1_9FIRM
Chemotaxis protein PomA {ECO:0000313|EMBL:CDA57733.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Flagellar motor component
L3_068_000G1_scaffold_276_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24142..24345)
DNA (204bp) protein (68aa)
Uncharacterized protein, possibly involved in motility n=4 Tax=Roseburia RepID=D4KQH3_9FIRM
Uncharacterized protein, possibly involved in motility
Uncharacterized protein, possibly involved in motility {ECO:0000313|EMBL:CBL11615.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_276_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24509..26230)
DNA (1722bp) protein (574aa)
Flagellar basal body and hook protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B3T4_9FIRM
Flagellar basal body and hook protein {ECO:0000313|EMBL:CDA57735.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
fagellar hook-basal body proteins
Displaying items 1-30 of 53 in total

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