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L3_068_000G1_scaffold_291

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_291_1
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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287..1384
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AP29_CITK8
Membrane-bound lytic murein transglycosylase A {ECO:0000313|EMBL:GAL50157.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
mltA; murein transglycosylase A
L3_068_000G1_scaffold_291_2
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1493..2299
DNA (807bp) protein (269aa)
ThiF family protein n=13 Tax=Escherichia coli RepID=D8A454_ECOLX
Sulfur acceptor protein CsdL {ECO:0000313|EMBL:AKE59820.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
sulfur acceptor protein CsdL
L3_068_000G1_scaffold_291_3
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2324..2770)
DNA (447bp) protein (149aa)
Cysteine desulfurase, sulfur acceptor subunit CsdE n=2 Tax=Citrobacter RepID=R8V3B7_9ENTR
Putative SufE-like protein YgdK {ECO:0000313|EMBL:GAL50159.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
Fe-S metabolism associated protein
L3_068_000G1_scaffold_291_4
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2767..3975)
DNA (1209bp) protein (403aa)
Cysteine desulfurase, catalytic subunit CsdA n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BGV2_9ENTR
Cysteine sulfinate desulfinase {ECO:0000313|EMBL:GAL50160.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
cysteine sulfinate desulfinase
L3_068_000G1_scaffold_291_5
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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4168..4395
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AP24_CITK8
Uncharacterized protein {ECO:0000313|EMBL:KDF09287.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
hypothetical protein
L3_068_000G1_scaffold_291_6
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4746..5663
DNA (918bp) protein (306aa)
Glycine cleavage system transcriptional activator n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TIN1_CITRI
Transcriptional activator GcvA {ECO:0000313|EMBL:GAL50162.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
gcvA; glycine cleavage system transcriptional activator
L3_068_000G1_scaffold_291_7
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5682..6077
DNA (396bp) protein (132aa)
Putative outer membrane protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TIN0_CITRI
Uncharacterized protein {ECO:0000313|EMBL:GAL50163.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_068_000G1_scaffold_291_8
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6070..7170
DNA (1101bp) protein (367aa)
Ribosomal RNA large subunit methyltransferase M {ECO:0000256|HAMAP-Rule:MF_01551, ECO:0000256|SAAS:SAAS00058276}; EC=2.1.1.186 {ECO:0000256|HAMAP-Rule:MF_01551, ECO:0000256|SAAS:SAAS00058274};; 23S rRNA (cytidine2498-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01551}; 23S rRNA 2'-O-ribose methyltransferase RlmM {ECO:0000256|HAMAP-Rule:MF_01551}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
mtfA; RNA 2'-O-ribose methyltransferase (EC:2.1.1.-)
Ribosomal RNA large subunit methyltransferase M n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TIM9_CITRI
L3_068_000G1_scaffold_291_9
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7750..7917
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=L4BMC2_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:GAL50165.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
membrane protein
L3_068_000G1_scaffold_291_10
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8040..8687
DNA (648bp) protein (216aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Acetobacter sp. CAG:267 RepID=R5XTC8_9PROT
Putative two-component response regulator {ECO:0000313|EMBL:GAL50166.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
ompR; OmpR protein
L3_068_000G1_scaffold_291_11
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8756..9313
DNA (558bp) protein (186aa)
Uncharacterized protein {ECO:0000313|EMBL:GAL50167.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L3_068_000G1_scaffold_291_12
unknown

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comp(9336..9851)
DNA (516bp) protein (172aa)

This feature has no annotations

L3_068_000G1_scaffold_291_13
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9841..10719)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YBN6_BILWA
Uncharacterized protein {ECO:0000313|EMBL:GAL50168.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
drug/metabolite exporter, EamA family
L3_068_000G1_scaffold_291_14
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10766..11317)
DNA (552bp) protein (184aa)
Uncharacterized protein {ECO:0000313|EMBL:GAL50169.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L3_068_000G1_scaffold_291_15
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11558..11965)
DNA (408bp) protein (136aa)
Uncharacterized protein n=6 Tax=Klebsiella RepID=R8X7D4_9ENTR
Putative DNA-binding protein {ECO:0000313|EMBL:GAL50170.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_068_000G1_scaffold_291_16
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12833..13306)
DNA (474bp) protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:GAL50172.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L3_068_000G1_scaffold_291_17
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13303..14019)
DNA (717bp) protein (239aa)
Putative transcriptional regulator n=2 Tax=Shigella flexneri RepID=F5N9S2_SHIFL
Putative DNA-binding protein {ECO:0000313|EMBL:GAL50173.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
Transcriptional regulator, CadC,Transcriptional regulatory protein, C terminal
L3_068_000G1_scaffold_291_18
unknown

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comp(14421..15044)
DNA (624bp) protein (208aa)

This feature has no annotations

L3_068_000G1_scaffold_291_19
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15222..15809)
DNA (588bp) protein (196aa)
Uncharacterized protein {ECO:0000313|EMBL:GAL50174.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L3_068_000G1_scaffold_291_20
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16214..16924)
DNA (711bp) protein (237aa)
L-fucose operon activator n=2 Tax=Citrobacter RepID=C1MAY5_9ENTR
Transcriptional activator FucR {ECO:0000313|EMBL:GAL50175.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
DNA-binding transcriptional activator FucR
L3_068_000G1_scaffold_291_21
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16967..17389)
DNA (423bp) protein (141aa)
L-fucose mutarotase {ECO:0000256|HAMAP-Rule:MF_01662, ECO:0000256|SAAS:SAAS00010479}; EC=5.1.3.29 {ECO:0000256|HAMAP-Rule:MF_01662, ECO:0000256|SAAS:SAAS00148242};; Fucose 1-epimerase {ECO:0000256|HAMAP-Rule:MF_01662}; Type-2 mutarotase {ECO:0000256|HAMAP-Rule:MF_01662}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L-fucose mutarotase n=499 Tax=Salmonella enterica I RepID=FUCM_SALA4
L-fucose mutarotase
L3_068_000G1_scaffold_291_22
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17401..18798)
DNA (1398bp) protein (466aa)
L-fuculokinase {ECO:0000256|HAMAP-Rule:MF_00986}; EC=2.7.1.51 {ECO:0000256|HAMAP-Rule:MF_00986};; L-fuculose kinase {ECO:0000256|HAMAP-Rule:MF_00986}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L-fuculokinase n=2 Tax=Salmonella virchow RepID=B5Q726_SALVI
SBOV30231; hypothetical protein
L3_068_000G1_scaffold_291_23
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18851..20626)
DNA (1776bp) protein (592aa)
L-fucose isomerase {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040911}; Short=FucIase {ECO:0000256|HAMAP-Rule:MF_01254};; EC=5.3.1.25 {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040955};; 6-deoxy-L-galactose isomerase {ECO:0000256|HAMAP-Rule:MF_01254}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L-fucose isomerase n=1 Tax=Escherichia coli UMEA 4076-1 RepID=T9XK87_ECOLX
fucI; L-fucose isomerase
L3_068_000G1_scaffold_291_24
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21103..22602
DNA (1500bp) protein (500aa)
Monosaccharide-transporting ATPase {ECO:0000256|SAAS:SAAS00041637}; EC=3.6.3.17 {ECO:0000256|SAAS:SAAS00041637};; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
Putative ABC transporter ATP-binding protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TIM4_CITRI
ABC transporter ATP-binding protein
L3_068_000G1_scaffold_291_25
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22606..23589
DNA (984bp) protein (328aa)
Uncharacterized protein n=3 Tax=Escherichia coli RepID=L2VNZ8_ECOLX
Putative sugar ABC transporter permease protein {ECO:0000313|EMBL:GAL50180.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
ribose ABC transporter permease
L3_068_000G1_scaffold_291_26
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23661..24611
DNA (951bp) protein (317aa)
Periplasmic binding protein and sugar binding domain of the LacI family protein n=39 Tax=Escherichia coli RepID=I2SNJ5_ECOLX
Putative sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAL50181.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
ABC transporter substrate-binding protein
L3_068_000G1_scaffold_291_27
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24755..25753
DNA (999bp) protein (333aa)
Putative transcriptional regulator n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TIM0_CITRI
Putative LacI family transcriptional regulator {ECO:0000313|EMBL:GAL50182.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
transcriptional regulator
L3_068_000G1_scaffold_291_28
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25811..26458
DNA (648bp) protein (216aa)
L-fuculose phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00987}; EC=4.1.2.17 {ECO:0000256|HAMAP-Rule:MF_00987};; L-fuculose-1-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00987}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
fucA; L-fuculose phosphate aldolase (EC:4.1.2.17)
L-fuculose phosphate aldolase n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TIL9_CITRI
L3_068_000G1_scaffold_291_29
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26524..27279)
DNA (756bp) protein (252aa)
Flap endonuclease Xni {ECO:0000256|HAMAP-Rule:MF_01192, ECO:0000256|SAAS:SAAS00008260}; Short=FEN {ECO:0000256|HAMAP-Rule:MF_01192};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01192, ECO:0000256|SAAS:SAAS00273675};; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
Flap endonuclease Xni n=2 Tax=Citrobacter RepID=R8V438_9ENTR
xni; exonuclease IX
L3_068_000G1_scaffold_291_30
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27392..28759)
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AP06_CITK8
L-serine dehydratase SdaB {ECO:0000313|EMBL:GAL50185.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
Displaying items 1-30 of 46 in total

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