ggKbase home page

L3_068_000G1_scaffold_339

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_339_1
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1..420
DNA (420bp) protein (140aa)
Uncharacterized protein n=6 Tax=Bacteroides RepID=A7LXI6_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EDO12047.1}; TaxID=411476 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC; 11153).;"
hypothetical protein
L3_068_000G1_scaffold_339_2
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(374..2683)
DNA (2310bp) protein (770aa)
Outer membrane protein, OMP85 family n=5 Tax=Bacteroides RepID=A7LXI5_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EIY68787.1}; TaxID=997885 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL02T12C04.;"
Outer membrane protein/protective antigen OMA87
L3_068_000G1_scaffold_339_3
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2826..3590
DNA (765bp) protein (255aa)
RNA methyltransferase, TrmH family n=4 Tax=Bacteroides RepID=A7LXI3_BACOV
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EFF50404.1}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
rRNA methylases
L3_068_000G1_scaffold_339_4
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3541..3933)
DNA (393bp) protein (131aa)
Uncharacterized protein n=3 Tax=Bacteroides ovatus RepID=A7LXI2_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EIY68785.1}; TaxID=997885 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL02T12C04.;"
hypothetical protein
L3_068_000G1_scaffold_339_5
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3939..5015)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=I9UVY4_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY86828.1}; TaxID=997892 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens CL03T12C04.;"
hypothetical protein
L3_068_000G1_scaffold_339_6
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5005..5661)
DNA (657bp) protein (219aa)
signal peptidase II . Aspartic peptidase. MEROPS family A08 (EC:3.4.23.36)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=997892 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens CL03T12C04.;"
Lipoprotein signal peptidase n=15 Tax=Bacteroides RepID=D6D705_9BACE
L3_068_000G1_scaffold_339_7
Bacteroides finegoldii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5759..6139)
DNA (381bp) protein (127aa)
DnaK suppressor protein n=23 Tax=Bacteroides RepID=D6D706_9BACE
DnaK suppressor protein
Uncharacterized protein {ECO:0000313|EMBL:EKJ92322.1}; TaxID=997888 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides finegoldii CL09T03C10.;"
L3_068_000G1_scaffold_339_8
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(6175..9663)
DNA (3489bp) protein (1163aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1339286 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3725 D9 ii.;"
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=4 Tax=Bacteroides RepID=D4WM45_BACOV
L3_068_000G1_scaffold_339_9
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9874..10923
DNA (1050bp) protein (350aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=I9AHN3_9BACE
Putative membrane protein {ECO:0000313|EMBL:EFF50398.1}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
Protein of unknown function (DUF2776).
L3_068_000G1_scaffold_339_10
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11021..12559)
DNA (1539bp) protein (513aa)
Hydrolase, carbon-nitrogen family n=2 Tax=Bacteroides RepID=D4WM43_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EIY86833.1}; TaxID=997892 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens CL03T12C04.;"
carbon-nitrogen hydrolase
L3_068_000G1_scaffold_339_11
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12655..12774
DNA (120bp) protein (40aa)
Putative uncharacterized protein n=1 Tax=Bacteroides xylanisolvens XB1A RepID=D6D727_9BACE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK65822.1}; TaxID=657309 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens XB1A.;"
L3_068_000G1_scaffold_339_12
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13098..13991
DNA (894bp) protein (298aa)
Transcriptional regulator, effector binding domain protein n=2 Tax=Bacteroides RepID=C3R0V3_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY86834.1}; TaxID=997892 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens CL03T12C04.;"
DNA gyrase inhibitor
L3_068_000G1_scaffold_339_13
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14038..14775)
DNA (738bp) protein (246aa)
Conserved domain protein n=2 Tax=Bacteroides RepID=D4WE96_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EIY86835.1}; TaxID=997892 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens CL03T12C04.;"
hypothetical protein
L3_068_000G1_scaffold_339_14
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14860..15330)
DNA (471bp) protein (157aa)
5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) n=3 Tax=Bacteroides RepID=C3R0V5_9BACE
5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) {ECO:0000313|EMBL:EFF53138.1}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
hypothetical protein
L3_068_000G1_scaffold_339_15
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15338..16207)
DNA (870bp) protein (290aa)
Uncharacterized protein n=3 Tax=Bacteroides RepID=C3R0V6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY86837.1}; TaxID=997892 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens CL03T12C04.;"
Peptidylarginine deiminase and related enzymes
L3_068_000G1_scaffold_339_16
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16450..17904)
DNA (1455bp) protein (485aa)
MFS transporter, sugar porter (SP) family protein n=2 Tax=Bacteroides RepID=D4WE93_BACOV
MFS transporter, sugar porter (SP) family protein {ECO:0000313|EMBL:EFF53136.1}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
MFS transporter, sugar porter (SP) family
L3_068_000G1_scaffold_339_17
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18043..19359)
DNA (1317bp) protein (439aa)
D-xylose isomerase (EC:5.3.1.5)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=997892 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens CL03T12C04.;"
Xylose isomerase n=17 Tax=Bacteroides RepID=D6D732_9BACE
L3_068_000G1_scaffold_339_18
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19402..20925)
DNA (1524bp) protein (508aa)
Sugar (pentulose and hexulose) kinases (EC:2.7.1.17)
Carbohydrate kinase, FGGY family protein n=2 Tax=Bacteroides RepID=D4WE91_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EIY86840.1}; TaxID=997892 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens CL03T12C04.;"
L3_068_000G1_scaffold_339_19
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21052..21783)
DNA (732bp) protein (244aa)
NUDIX domain n=17 Tax=Bacteroides RepID=D6D734_9BACE
NUDIX domain.
Uncharacterized protein {ECO:0000313|EMBL:EGN00351.1}; TaxID=665954 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus 3_8_47FAA.;"
L3_068_000G1_scaffold_339_20
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22124..22960
DNA (837bp) protein (279aa)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EFF53132.1}; EC=2.7.4.7 {ECO:0000313|EMBL:EFF53132.1};; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=2 Tax=Bacteroides RepID=D4WE89_BACOV
L3_068_000G1_scaffold_339_21
Bacteroides sp. 3_1_23, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23011..23898
DNA (888bp) protein (296aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=457390 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_23.;"
[Acyl-carrier-protein] S-malonyltransferase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase n=3 Tax=Bacteroides RepID=D4WE88_BACOV
L3_068_000G1_scaffold_339_22
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23949..24080)
DNA (132bp) protein (44aa)
Uncharacterized protein n=3 Tax=Bacteroides RepID=C3QKM1_9BACE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK65832.1}; TaxID=657309 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens XB1A.;"
L3_068_000G1_scaffold_339_23
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24100..25230
DNA (1131bp) protein (377aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=997892 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens CL03T12C04.;"
succinyl-CoA synthetase (ADP-forming) beta subunit (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta n=2 Tax=Bacteroides RepID=D4WE87_BACOV
L3_068_000G1_scaffold_339_24
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25263..26123
DNA (861bp) protein (287aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
succinyl-CoA synthetase (ADP-forming) alpha subunit (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha n=3 Tax=Bacteroides RepID=D4WE86_BACOV
L3_068_000G1_scaffold_339_25
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26234..27013)
DNA (780bp) protein (260aa)
Uncharacterized protein n=9 Tax=Bacteroides RepID=E5CGE5_9BACE
Putative membrane protein {ECO:0000313|EMBL:EFF53128.1}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
hypothetical protein
L3_068_000G1_scaffold_339_26
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27151..27324
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 2_2_4 RepID=C3R0W8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY68768.1}; TaxID=997885 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL02T12C04.;"
hypothetical protein
L3_068_000G1_scaffold_339_27
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27387..27632)
DNA (246bp) protein (82aa)
Uncharacterized protein n=9 Tax=Bacteroides RepID=A7LXG1_BACOV
Putative uncharacterized protein {ECO:0000313|EMBL:EFF53126.1}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
RNA-binding proteins (RRM domain)
L3_068_000G1_scaffold_339_28
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27909..28631)
DNA (723bp) protein (241aa)
Response regulator receiver domain protein n=2 Tax=Bacteroides RepID=D4WE81_BACOV
Response regulator receiver domain protein {ECO:0000313|EMBL:EFF53124.1}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
two-component system response regulator
L3_068_000G1_scaffold_339_29
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28628..29716)
DNA (1089bp) protein (363aa)
Histidine kinase n=3 Tax=Bacteroides RepID=C3R0X2_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY63630.1}; TaxID=997886 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL03T12C18.;"
signal transduction histidine kinase, LytS
L3_068_000G1_scaffold_339_30
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29686..30720)
DNA (1035bp) protein (345aa)
Histidine kinase n=4 Tax=Bacteroides RepID=A7LXF7_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EIY68764.1}; TaxID=997885 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL02T12C04.;"
signal transduction histidine kinase, LytS
Displaying items 1-30 of 44 in total

View Taxonomy