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L3_068_000G1_scaffold_407

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_407_1
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..627)
DNA (627bp) protein (209aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
Two-component system sensor histidine kinase n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XIB2_9CLOT
integral membrane sensor signal transduction histidine kinase
L3_068_000G1_scaffold_407_2
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(656..1525)
DNA (870bp) protein (290aa)
DegV family EDD domain-containing protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9VXA8_9CLOT
DegV family EDD domain-containing protein {ECO:0000313|EMBL:ENY95370.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
degV family protein
L3_068_000G1_scaffold_407_3
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1734..3350)
DNA (1617bp) protein (539aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=2 Tax=Ruminococcus RepID=C6J896_9FIRM
L3_068_000G1_scaffold_407_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3403..3660)
DNA (258bp) protein (86aa)
HPr family phosphocarrier n=2 Tax=Ruminococcus RepID=C6J897_9FIRM
PTS system phosphocarrier protein Hpr {ECO:0000313|EMBL:CDD77258.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
phosphotransferase system, phosphocarrier protein HPr
L3_068_000G1_scaffold_407_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3958..5217)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J898_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78550.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ABC-type antimicrobial peptide transport system, permease component
L3_068_000G1_scaffold_407_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5237..7258)
DNA (2022bp) protein (674aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J899_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80462.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_068_000G1_scaffold_407_7
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7264..7935)
DNA (672bp) protein (224aa)
ABC-type antimicrobial peptide transport system, ATPase component (EC:3.6.3.-)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J8A0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78552.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_068_000G1_scaffold_407_8
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7932..9410)
DNA (1479bp) protein (493aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J8A1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80460.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Membrane-fusion protein
L3_068_000G1_scaffold_407_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9694..10905
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J8A2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78554.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_068_000G1_scaffold_407_10
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11073..11831)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J8A3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78555.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted permeases
L3_068_000G1_scaffold_407_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11834..13630)
DNA (1797bp) protein (599aa)
aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J8A4_9FIRM
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:EES78556.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_068_000G1_scaffold_407_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13727..14953)
DNA (1227bp) protein (409aa)
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine-tRNA ligase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J8A5_9FIRM
Histidine-tRNA ligase {ECO:0000313|EMBL:EES78557.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_068_000G1_scaffold_407_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14916..15578)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J8A6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78558.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
HD-GYP domain
L3_068_000G1_scaffold_407_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15596..17110)
DNA (1515bp) protein (505aa)
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase HemZ n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J8A7_9FIRM
Coproporphyrinogen dehydrogenase HemZ {ECO:0000313|EMBL:EES78559.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_068_000G1_scaffold_407_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17103..17732)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J8A8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78560.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Zn-dependent hydrolases, including glyoxylases
L3_068_000G1_scaffold_407_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17797..20127)
DNA (2331bp) protein (777aa)
(p)ppGpp synthetase, RelA/SpoT family (EC:2.7.6.5)
RelA/SpoT family protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J8A9_9FIRM
RelA/SpoT family protein {ECO:0000313|EMBL:EES78561.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_068_000G1_scaffold_407_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20165..20689)
DNA (525bp) protein (175aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase n=2 Tax=Ruminococcus RepID=C6J8B0_9FIRM
L3_068_000G1_scaffold_407_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20872..22584)
DNA (1713bp) protein (571aa)
exonuclease RecJ (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J8B1_9FIRM
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EES78563.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_068_000G1_scaffold_407_19
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22666..25074)
DNA (2409bp) protein (803aa)
Protein-export membrane protein SecD n=2 Tax=Ruminococcus RepID=C6J8B2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80441.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
protein translocase subunit secF/protein translocase subunit secD
L3_068_000G1_scaffold_407_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25186..26553)
DNA (1368bp) protein (456aa)
Six-Cys-in-45 modification radical SAM protein n=2 Tax=Ruminococcus RepID=C6J8B3_9FIRM
Six-Cys-in-45 modification radical SAM protein {ECO:0000313|EMBL:EES78565.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Arylsulfatase regulator (Fe-S oxidoreductase)
L3_068_000G1_scaffold_407_21
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26634..26774)
DNA (141bp) protein (47aa)
RSAM-modified six-cysteine peptide SCIFF n=2 Tax=Ruminococcus RepID=C6J8B4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80439.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_068_000G1_scaffold_407_22
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26848..27198)
DNA (351bp) protein (117aa)
TIGR04097 family integral membrane protein n=2 Tax=Ruminococcus RepID=C6J8B5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80438.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_068_000G1_scaffold_407_23
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27248..28753)
DNA (1506bp) protein (502aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CS08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80437.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_068_000G1_scaffold_407_24
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29098..30381
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CR82_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80436.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_068_000G1_scaffold_407_25
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30385..30987)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J8B8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78570.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_068_000G1_scaffold_407_26
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31255..32019)
DNA (765bp) protein (255aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J8B9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80433.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_068_000G1_scaffold_407_27
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32283..33347
DNA (1065bp) protein (355aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J8C0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78572.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ABC-type uncharacterized transport system, periplasmic component
L3_068_000G1_scaffold_407_28
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33497..34414
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CR08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80430.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ABC-type uncharacterized transport system, permease component
L3_068_000G1_scaffold_407_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34417..35211
DNA (795bp) protein (265aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J8C2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78574.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ABC-type uncharacterized transport system, ATPase component
L3_068_000G1_scaffold_407_30
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35286..36236)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CSK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80428.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
Displaying items 1-30 of 35 in total

View Taxonomy