ggKbase home page

L3_068_000G1_scaffold_448

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_448_1
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..1485
DNA (1485bp) protein (495aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|SAAS:SAAS00096570};; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=8 Tax=Clostridium clostridioforme RepID=N9WV32_9CLOT
L3_068_000G1_scaffold_448_2
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1554..2897)
DNA (1344bp) protein (448aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9X631_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ67995.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_068_000G1_scaffold_448_3
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2897..3625)
DNA (729bp) protein (243aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9VLM2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ17515.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L3_068_000G1_scaffold_448_4
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3850..4062
DNA (213bp) protein (71aa)
Uncharacterized protein n=13 Tax=Clostridium RepID=A8RKE7_9CLOT
Small acid-soluble spore protein {ECO:0000313|EMBL:ENZ17514.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L3_068_000G1_scaffold_448_5
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4118..5182
DNA (1065bp) protein (355aa)
Uncharacterized protein n=8 Tax=Clostridium clostridioforme RepID=N9WXK4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ67992.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
cobalamin (vitamin B12) biosynthesis protein CbiG
L3_068_000G1_scaffold_448_6
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5278..6480
DNA (1203bp) protein (401aa)
Cobalt-precorrin-5B C(1)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00787}; EC=2.1.1.195 {ECO:0000256|HAMAP-Rule:MF_00787};; Cobalt-precorrin-6A synthase {ECO:0000256|HAMAP-Rule:MF_00787}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
Putative cobalt-precorrin-6A synthase [deacetylating] n=7 Tax=Clostridium clostridioforme RepID=N9WV35_9CLOT
cobalamin biosynthesis protein CbiD
L3_068_000G1_scaffold_448_7
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6494..8008
DNA (1515bp) protein (505aa)
precorrin-4 C11-methyltransferase (EC:2.1.1.133)
Precorrin-4 C11-methyltransferase n=9 Tax=Clostridium RepID=N9X634_9CLOT
Precorrin-4 C11-methyltransferase {ECO:0000313|EMBL:ENZ17511.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_068_000G1_scaffold_448_8
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7995..8846
DNA (852bp) protein (284aa)
precorrin-6x reductase (EC:1.3.1.54)
Precorrin-6x reductase n=7 Tax=Clostridium clostridioforme RepID=N9VLM6_9CLOT
Precorrin-6x reductase {ECO:0000313|EMBL:ENZ67989.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
L3_068_000G1_scaffold_448_9
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8818..10137
DNA (1320bp) protein (440aa)
Precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE subunit n=7 Tax=Clostridium clostridioforme RepID=N9VL21_9CLOT
Precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE subunit {ECO:0000313|EMBL:ENZ67988.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
precorrin-6x reductase
L3_068_000G1_scaffold_448_10
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10122..11552
DNA (1431bp) protein (477aa)
cobyrinic acid a,c-diamide synthase (EC:6.3.5.9)
Cobyrinic acid a,c-diamide synthase n=7 Tax=Clostridium clostridioforme RepID=N9WXK9_9CLOT
Cobyrinic acid a,c-diamide synthase {ECO:0000313|EMBL:ENZ17508.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_068_000G1_scaffold_448_11
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11549..12607
DNA (1059bp) protein (353aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=9 Tax=Clostridium RepID=G5HWY3_9CLOT
L3_068_000G1_scaffold_448_12
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12647..13288
DNA (642bp) protein (214aa)
Adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase n=8 Tax=Clostridium clostridioforme RepID=N9X639_9CLOT
Adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase {ECO:0000313|EMBL:ENZ67985.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
putative cobinamide kinase/cobinamide phosphate guanylyltransferase
L3_068_000G1_scaffold_448_13
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13285..14118
DNA (834bp) protein (278aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Cobalamin synthase n=9 Tax=Clostridium RepID=G5HWY5_9CLOT
cobalamin-5-phosphate synthase CobS
L3_068_000G1_scaffold_448_14
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14121..14540
DNA (420bp) protein (140aa)
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase (EC:2.7.1.156 2.7.7.62)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9VL25_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB63466.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
L3_068_000G1_scaffold_448_15
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14555..15553
DNA (999bp) protein (333aa)
adenosylcobinamide-phosphate synthase (EC:6.3.1.10)
Cobalamin biosynthesis protein CobD n=9 Tax=Clostridium RepID=G5HWY7_9CLOT
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
L3_068_000G1_scaffold_448_16
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15610..16734
DNA (1125bp) protein (375aa)
Threonine-phosphate decarboxylase n=8 Tax=Clostridium RepID=N9WV45_9CLOT
Threonine-phosphate decarboxylase {ECO:0000313|EMBL:ENZ67981.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
class I and II aminotransferase
L3_068_000G1_scaffold_448_17
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16707..18371
DNA (1665bp) protein (555aa)
Cobyric acid synthase n=7 Tax=Clostridium RepID=N9X643_9CLOT
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028, ECO:0000256|SAAS:SAAS00231811}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
cobyric acid synthase CobQ
L3_068_000G1_scaffold_448_18
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18328..18984
DNA (657bp) protein (219aa)
Precorrin isomerase (EC:5.4.1.2)
Precorrin-8X methylmutase n=10 Tax=Clostridium RepID=N9VLN6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25211.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
L3_068_000G1_scaffold_448_19
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18992..20398)
DNA (1407bp) protein (469aa)
Amidophosphoribosyltransferase {ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|PIRNR:PIRNR000485}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Glutamine phosphoribosylpyrophosphate amidotransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=9 Tax=Clostridium RepID=G5HWZ1_9CLOT
L3_068_000G1_scaffold_448_20
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20673..21731
DNA (1059bp) protein (353aa)
pectinesterase (EC:3.1.1.11)
Pectinesterase n=7 Tax=Clostridium clostridioforme RepID=N9WXL8_9CLOT
Pectinesterase {ECO:0000313|EMBL:ENZ67977.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
L3_068_000G1_scaffold_448_21
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21750..23387
DNA (1638bp) protein (546aa)
Two-component system response regulator YesN n=10 Tax=Clostridium RepID=N9WV51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25214.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
AraC family transcriptional regulator
L3_068_000G1_scaffold_448_22
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23452..25248
DNA (1797bp) protein (599aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Cache domain./Histidine kinase./HAMP domain. (EC:2.7.13.3)
Two-component system sensor histidine kinase YesM n=8 Tax=Clostridium RepID=N9X647_9CLOT
L3_068_000G1_scaffold_448_23
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25238..26209
DNA (972bp) protein (324aa)
Ribose ABC transporter substrate-binding protein n=9 Tax=Clostridium RepID=N9VLN9_9CLOT
Ribose ABC transporter substrate-binding protein {ECO:0000313|EMBL:ENZ17495.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
sugar ABC transporter periplasmic protein
L3_068_000G1_scaffold_448_24
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26276..27313
DNA (1038bp) protein (346aa)
Methyl-galactoside ABC transporter substrate-binding protein n=9 Tax=Clostridium RepID=N9VL35_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25217.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_068_000G1_scaffold_448_25
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27472..28812
DNA (1341bp) protein (447aa)
Methyl-galactoside ABC transporter substrate-binding protein n=9 Tax=Clostridium RepID=N9WXM2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25218.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_068_000G1_scaffold_448_26
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28910..30418
DNA (1509bp) protein (503aa)
monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) (EC:3.6.3.17)
Galactose/methyl galactoside import ATP-binding protein MglA n=9 Tax=Clostridium RepID=G5HWZ8_9CLOT
Methyl-galactoside ABC transporter ATP-binding protein {ECO:0000313|EMBL:ENZ67971.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
L3_068_000G1_scaffold_448_27
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30434..32089
DNA (1656bp) protein (552aa)
Methyl-galactoside ABC transporter permease n=9 Tax=Clostridium RepID=N9X652_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25220.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
L3_068_000G1_scaffold_448_28
unknown

Not on your lists

comp(32185..32379)
DNA (195bp) protein (65aa)

This feature has no annotations

L3_068_000G1_scaffold_448_29
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32373..32825)
DNA (453bp) protein (151aa)
Adenylate cyclase n=9 Tax=Clostridium RepID=G5HX00_9CLOT
Adenylate cyclase {ECO:0000313|EMBL:ENZ17490.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
adenylate cyclase
L3_068_000G1_scaffold_448_30
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32962..33537
DNA (576bp) protein (192aa)
Uncharacterized protein n=7 Tax=Clostridium RepID=A8RKB7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP18390.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
DJ-1 family protein
Displaying items 1-30 of 33 in total

View Taxonomy