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L3_068_000G1_scaffold_472

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_472_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..754)
DNA (753bp) protein (251aa)
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6APG0_9FIRM
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA53943.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_472_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(955..2391)
DNA (1437bp) protein (479aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUQ3_9FIRM
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL11093.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_472_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2525..3535)
DNA (1011bp) protein (337aa)
Transcriptional regulator, LacI family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUQ2_9FIRM
transcriptional regulator, LacI family
Transcriptional regulator, LacI family {ECO:0000313|EMBL:CBL11092.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_472_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3972..6416
DNA (2445bp) protein (815aa)
Cellobiose phosphorylase {ECO:0000313|EMBL:CBL11091.1}; EC=2.4.1.20 {ECO:0000313|EMBL:CBL11091.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
cellobiose phosphorylase (EC:2.4.1.20)
Cellobiose phosphorylase n=2 Tax=Roseburia intestinalis RepID=D4KUQ1_9FIRM
L3_068_000G1_scaffold_472_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6484..7317)
DNA (834bp) protein (278aa)
Transcriptional regulator, AraC family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUQ0_9FIRM
transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CBL11090.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_472_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7450..8820
DNA (1371bp) protein (457aa)
Putative efflux protein, MATE family n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSF4_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL09806.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_472_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8887..10665)
DNA (1779bp) protein (593aa)
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504, ECO:0000313|EMBL:CBL09805.1}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504, ECO:0000313|EMBL:CBL09805.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Pyruvate kinase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSF3_9FIRM
L3_068_000G1_scaffold_472_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10736..11668)
DNA (933bp) protein (311aa)
Carbamate kinase (EC:2.7.2.2)
Carbamate kinase n=4 Tax=Roseburia RepID=D4KSF2_9FIRM
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723, ECO:0000313|EMBL:CBL11087.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_472_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11827..12426)
DNA (600bp) protein (200aa)
Probable GTP-binding protein EngB n=2 Tax=Roseburia intestinalis RepID=D4KSF1_9FIRM
ribosome biogenesis GTP-binding protein YsxC/EngB
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321, ECO:0000256|SAAS:SAAS00023450}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_472_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12504..14828)
DNA (2325bp) protein (775aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Lon protease n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDZ9_9FIRM
ATP-dependent protease La
L3_068_000G1_scaffold_472_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14821..16092)
DNA (1272bp) protein (424aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=4 Tax=Roseburia RepID=D4KSF0_9FIRM
endopeptidase Clp ATP-binding regulatory subunit (clpX)
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_472_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16113..16694)
DNA (582bp) protein (194aa)
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
ATP-dependent Clp protease proteolytic subunit n=4 Tax=Roseburia RepID=D4KSE9_9FIRM
L3_068_000G1_scaffold_472_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16812..18167)
DNA (1356bp) protein (452aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Trigger factor n=3 Tax=Roseburia RepID=D4KSE8_9FIRM
trigger factor
L3_068_000G1_scaffold_472_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18325..19128)
DNA (804bp) protein (268aa)
Hydrolase, NUDIX family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GE03_9FIRM
Hydrolase, NUDIX family {ECO:0000313|EMBL:EEU99948.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Xanthosine triphosphate pyrophosphatase
L3_068_000G1_scaffold_472_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19138..19368)
DNA (231bp) protein (77aa)
Xanthosine triphosphate pyrophosphatase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSE7_9FIRM
Xanthosine triphosphate pyrophosphatase
Xanthosine triphosphate pyrophosphatase {ECO:0000313|EMBL:CBL09799.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_472_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19394..19873)
DNA (480bp) protein (160aa)
ADP-ribose pyrophosphatase (EC:3.6.1.-)
Mutator MutT protein n=2 Tax=Roseburia RepID=R6ASK6_9FIRM
Mutator MutT protein {ECO:0000313|EMBL:CDA53965.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000G1_scaffold_472_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19949..21742)
DNA (1794bp) protein (598aa)
ABC transporter, ATP-binding protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GE05_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEU99950.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ABC-type multidrug transport system, ATPase and permease components
L3_068_000G1_scaffold_472_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21742..23550)
DNA (1809bp) protein (603aa)
ABC transporter, ATP-binding protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GE06_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEU99951.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ABC-type multidrug transport system, ATPase and permease components
L3_068_000G1_scaffold_472_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23860..24519)
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUP0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11080.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_472_20
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24519..25784)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EVS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ62226.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
ATPase AAA
L3_068_000G1_scaffold_472_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25877..26581)
DNA (705bp) protein (235aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUN9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11079.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_472_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26586..26933
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C6H3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22944.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Transposase helper protein
L3_068_000G1_scaffold_472_23
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26923..27741
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HDA6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE36948.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
Transposase and inactivated derivatives
L3_068_000G1_scaffold_472_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27825..28340)
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUN9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11079.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_472_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28388..28561)
DNA (174bp) protein (58aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUN8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11078.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_472_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28555..29832)
DNA (1278bp) protein (426aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUN7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11077.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_472_27
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30065..30631)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YLD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD62935.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
hypothetical protein
L3_068_000G1_scaffold_472_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30628..32595)
DNA (1968bp) protein (656aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUN5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11075.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000G1_scaffold_472_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32702..33679)
DNA (978bp) protein (326aa)
Putative transposase, YhgA-like n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KLR3_9FIRM
Putative transposase, YhgA-like.
Putative transposase, YhgA-like {ECO:0000313|EMBL:CBL07815.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_000G1_scaffold_472_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34002..34397)
DNA (396bp) protein (132aa)
PAP_fibrillin n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUN3_9FIRM
PAP_fibrillin.
PAP_fibrillin {ECO:0000313|EMBL:CBL11073.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Displaying 30 items

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