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L3_068_000G1_scaffold_476

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_476_1
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(414..902)
DNA (489bp) protein (163aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=N9YM36_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ08857.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L3_068_000G1_scaffold_476_2
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(899..2026)
DNA (1128bp) protein (376aa)
Ribose ABC transporter permease n=10 Tax=Clostridium RepID=N9WIV3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB61515.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
permease component of ribose/xylose/arabinose/galactoside ABC-type transporters
L3_068_000G1_scaffold_476_3
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2023..3102)
DNA (1080bp) protein (360aa)
Ribose ABC transporter permease n=9 Tax=Clostridium RepID=N9UY88_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25937.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
monosaccharide ABC transporter membrane protein, CUT2 family
L3_068_000G1_scaffold_476_4
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3116..4705)
DNA (1590bp) protein (530aa)
Ribose ABC transporter ATP-binding protein n=8 Tax=Clostridium RepID=N9UYT7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25938.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
monosaccharide ABC transporter ATP-binding protein, CUT2 family
L3_068_000G1_scaffold_476_5
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4785..6098)
DNA (1314bp) protein (438aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=N9WIA6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ57949.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_068_000G1_scaffold_476_6
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6266..7789)
DNA (1524bp) protein (508aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Integral membrane sensor signal transduction histidine kinase n=9 Tax=Clostridium RepID=N9W787_9CLOT
integral membrane sensor signal transduction histidine kinase
L3_068_000G1_scaffold_476_7
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7786..8466)
DNA (681bp) protein (227aa)
Two-component system response regulator n=10 Tax=Clostridium RepID=N9WIU7_9CLOT
Two-component system response regulator {ECO:0000313|EMBL:ENZ08863.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
winged helix family two component transcriptional regulator
L3_068_000G1_scaffold_476_8
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8676..8999)
DNA (324bp) protein (108aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9UY83_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ08864.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Protein of unknown function (DUF1292).
L3_068_000G1_scaffold_476_9
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9107..9649)
DNA (543bp) protein (181aa)
Cob(I)yrinic acid a,c-diamide adenosyltransferase n=9 Tax=Clostridium RepID=N9UYT0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25943.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
L3_068_000G1_scaffold_476_10
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9646..9951)
DNA (306bp) protein (102aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
UvrD/REP helicase n=6 Tax=Clostridium clostridioforme RepID=N9WIA2_9CLOT
UvrD/REP helicase
L3_068_000G1_scaffold_476_11
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9967..11472)
DNA (1506bp) protein (502aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
UvrD/REP helicase n=6 Tax=Clostridium clostridioforme RepID=N9WIA2_9CLOT
UvrD/REP helicase
L3_068_000G1_scaffold_476_12
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11484..12935)
DNA (1452bp) protein (484aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=9 Tax=Clostridium RepID=G5I7I3_9CLOT
L3_068_000G1_scaffold_476_13
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13045..13596)
DNA (552bp) protein (184aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=N9WIU2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ57956.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
L3_068_000G1_scaffold_476_14
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13689..15812)
DNA (2124bp) protein (708aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=9 Tax=Clostridium RepID=G5I7I1_9CLOT
L3_068_000G1_scaffold_476_15
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16047..16313)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=19 Tax=Clostridiales RepID=A8RZ95_9CLOT
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
SSU ribosomal protein S15P
L3_068_000G1_scaffold_476_16
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16310..16489)
DNA (180bp) protein (60aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9WI97_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ57959.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
L3_068_000G1_scaffold_476_17
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16491..17441)
DNA (951bp) protein (317aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Riboflavin biosynthesis protein RibF n=9 Tax=Clostridium RepID=G5I7H8_9CLOT
riboflavin biosynthesis protein RibF
L3_068_000G1_scaffold_476_18
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17500..18426)
DNA (927bp) protein (309aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
tRNA pseudouridine synthase B (EC:4.2.1.70 5.4.99.12)
tRNA pseudouridine synthase B n=9 Tax=Clostridium RepID=G5I7H7_9CLOT
L3_068_000G1_scaffold_476_19
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18437..19405)
DNA (969bp) protein (323aa)
Phosphoesterase RecJ protein n=6 Tax=Clostridium RepID=N9UY73_9CLOT
Phosphoesterase RecJ protein {ECO:0000313|EMBL:ENZ08874.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Exopolyphosphatase-related proteins
L3_068_000G1_scaffold_476_20
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19405..19806)
DNA (402bp) protein (134aa)
Ribosome-binding factor A n=17 Tax=Clostridium RepID=A8RZ90_9CLOT
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
ribosome-binding factor A
L3_068_000G1_scaffold_476_21
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19832..23152)
DNA (3321bp) protein (1107aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium clostridioforme 90B1 RepID=N9WPT4_9CLOT
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
translation initiation factor IF-2
L3_068_000G1_scaffold_476_22
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23139..23474)
DNA (336bp) protein (112aa)
50S ribosomal protein L7 n=9 Tax=Clostridium RepID=N9W771_9CLOT
50S ribosomal protein L7 {ECO:0000313|EMBL:ENZ08745.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
ribosomal protein L7Ae/L30e/S12e/Gadd45
L3_068_000G1_scaffold_476_23
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23464..23736)
DNA (273bp) protein (91aa)
Uncharacterized protein n=15 Tax=Clostridium RepID=N9WIT1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62208.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
hypothetical protein
L3_068_000G1_scaffold_476_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23771..24937)
DNA (1167bp) protein (389aa)
Transcription termination factor NusA n=9 Tax=Clostridium RepID=G5I7H1_9CLOT
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
transcription termination factor NusA
L3_068_000G1_scaffold_476_25
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24979..25446)
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=9 Tax=Clostridium RepID=G5I7H0_9CLOT
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_068_000G1_scaffold_476_26
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25623..26762)
DNA (1140bp) protein (380aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=9 Tax=Clostridium RepID=G5I7G9_9CLOT
L3_068_000G1_scaffold_476_27
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27046..28281)
DNA (1236bp) protein (412aa)
[FeFe] hydrogenase H-cluster maturation GTPase HydF n=9 Tax=Clostridium RepID=N9W765_9CLOT
[FeFe] hydrogenase H-cluster maturation GTPase HydF {ECO:0000313|EMBL:ENZ08750.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
iron-only hydrogenase maturation protein HydF
L3_068_000G1_scaffold_476_28
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28306..29727)
DNA (1422bp) protein (474aa)
[FeFe] hydrogenase H-cluster radical SAM maturase HydG n=9 Tax=Clostridium RepID=N9WIS6_9CLOT
[FeFe] hydrogenase H-cluster radical SAM maturase HydG {ECO:0000313|EMBL:ENZ57840.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
iron-only hydrogenase maturation protein HydG
L3_068_000G1_scaffold_476_29
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29818..30069)
DNA (252bp) protein (84aa)
Uncharacterized protein n=7 Tax=Clostridium clostridioforme RepID=N9ZMZ6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ57841.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_068_000G1_scaffold_476_30
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30341..31282)
DNA (942bp) protein (314aa)
Sugar ABC transporter permease n=9 Tax=Clostridium RepID=N9UYR1_9CLOT
Sugar ABC transporter permease {ECO:0000313|EMBL:ENZ08753.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
inner-membrane translocator
Displaying items 1-30 of 33 in total

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