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L3_068_000G1_scaffold_518

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_518_1
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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64..1890
DNA (1827bp) protein (609aa)
Transposase protein B n=3 Tax=Bacillus RepID=B5VC49_BACCE
transposase protein B
Transposase protein B {ECO:0000313|EMBL:AKA71486.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L3_068_000G1_scaffold_518_2
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1943..3547
DNA (1605bp) protein (535aa)
AAA ATPase central domain protein n=1 Tax=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) RepID=A3DEG8_CLOTH
Tn7-like transposition protein C
AAA ATPase central domain protein {ECO:0000313|EMBL:ABN52347.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_068_000G1_scaffold_518_3
unknown

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3544..4416
DNA (873bp) protein (291aa)

This feature has no annotations

L3_068_000G1_scaffold_518_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4775..5131
DNA (357bp) protein (119aa)
UPF0122 protein HMPREF0991_01626 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TMN3_9FIRM
UPF0122 protein BN481_02178 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_068_000G1_scaffold_518_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5133..6485
DNA (1353bp) protein (451aa)
Signal recognition particle protein n=3 Tax=Clostridiales RepID=A7B0P4_RUMGN
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
signal recognition particle protein
L3_068_000G1_scaffold_518_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6531..6776
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=4 Tax=Clostridiales RepID=A7B0P3_RUMGN
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
SSU ribosomal protein S16P
L3_068_000G1_scaffold_518_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6801..7031
DNA (231bp) protein (77aa)
UPF0109 protein RUMGNA_01118 n=3 Tax=Lachnospiraceae RepID=A7B0P2_RUMGN
UPF0109 protein RUMGNA_01118 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
RNA-binding protein (KH domain)
L3_068_000G1_scaffold_518_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7108..7626
DNA (519bp) protein (173aa)
Ribosome maturation factor RimM n=2 Tax=Ruminococcus gnavus RepID=A7B0P1_RUMGN
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
16S rRNA processing protein RimM
L3_068_000G1_scaffold_518_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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7658..8416
DNA (759bp) protein (253aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Lachnospiraceae RepID=A7B0P0_RUMGN
L3_068_000G1_scaffold_518_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8520..8867
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=4 Tax=Clostridiales RepID=A7B0N9_RUMGN
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ribosomal protein L19, bacterial type
L3_068_000G1_scaffold_518_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8933..9541
DNA (609bp) protein (203aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0N8_RUMGN
L3_068_000G1_scaffold_518_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9556..10422
DNA (867bp) protein (289aa)
Ribosome biogenesis GTPase A n=3 Tax=Clostridiales RepID=A7B0N7_RUMGN
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ribosome biogenesis GTP-binding protein YlqF
L3_068_000G1_scaffold_518_13
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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10441..10998
DNA (558bp) protein (186aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=4 Tax=Clostridiales RepID=A7B0N6_RUMGN
L3_068_000G1_scaffold_518_14
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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11023..11775
DNA (753bp) protein (251aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=2 Tax=Lachnospiraceae RepID=A7B0N5_RUMGN
L3_068_000G1_scaffold_518_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11811..12164
DNA (354bp) protein (118aa)
UPF0102 protein RUMGNA_01110 n=4 Tax=Clostridiales RepID=A7B0N4_RUMGN
UPF0102 protein HMPREF0991_01614 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
conserved hypothetical protein TIGR00252
L3_068_000G1_scaffold_518_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12189..13046
DNA (858bp) protein (286aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=A7B0N3_RUMGN
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
conserved hypothetical protein TIGR00726
L3_068_000G1_scaffold_518_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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13049..13936
DNA (888bp) protein (296aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JXF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN47697.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Small-conductance mechanosensitive channel
L3_068_000G1_scaffold_518_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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14078..15553
DNA (1476bp) protein (492aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BW39_RUMGN
L3_068_000G1_scaffold_518_19
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15568..17796
DNA (2229bp) protein (743aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TML8_9FIRM
primosomal protein N (replication factor Y) - superfamily II helicase
L3_068_000G1_scaffold_518_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17835..18314
DNA (480bp) protein (160aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=3 Tax=Lachnospiraceae RepID=A7B7D0_RUMGN
L3_068_000G1_scaffold_518_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18315..19247
DNA (933bp) protein (311aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=2 Tax=Lachnospiraceae RepID=A7B7C9_RUMGN
L3_068_000G1_scaffold_518_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19270..19968
DNA (699bp) protein (233aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=V8BWY8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47690.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
putative Zn-dependent protease
L3_068_000G1_scaffold_518_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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19961..21307
DNA (1347bp) protein (449aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ribosomal RNA small subunit methyltransferase RsmB (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B n=3 Tax=Lachnospiraceae RepID=A7B7C7_RUMGN
L3_068_000G1_scaffold_518_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21323..22363
DNA (1041bp) protein (347aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
23S rRNA methyltransferase n=3 Tax=Clostridiales RepID=V8BV42_RUMGN
L3_068_000G1_scaffold_518_25
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22376..23119
DNA (744bp) protein (248aa)
Serine/threonine protein phosphatase (EC:3.1.3.16)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TUF7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66924.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_068_000G1_scaffold_518_26
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23113..25206
DNA (2094bp) protein (698aa)
PASTA domain./Protein kinase domain. (EC:2.7.11.1)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TME2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66923.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_068_000G1_scaffold_518_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25221..26099
DNA (879bp) protein (293aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B7C3_RUMGN
L3_068_000G1_scaffold_518_28
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26103..26765
DNA (663bp) protein (221aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=2 Tax=Clostridiales RepID=R5U716_9FIRM
L3_068_000G1_scaffold_518_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26758..27411
DNA (654bp) protein (218aa)
thiamine diphosphokinase (EC:2.7.6.2)
Thiamine pyrophosphokinase n=2 Tax=Clostridiales RepID=R5TMK3_9FIRM
Thiamine pyrophosphokinase {ECO:0000313|EMBL:ETD18969.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_068_000G1_scaffold_518_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27429..28526
DNA (1098bp) protein (366aa)
Ribosome-binding ATPase YchF n=4 Tax=Clostridiales RepID=A7B7A9_RUMGN
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
GTP-binding protein YchF
Displaying items 1-30 of 33 in total

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