ggKbase home page

L3_068_000G1_scaffold_740

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_740_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


64..354
DNA (291bp) protein (97aa)
30S ribosomal protein S6 n=26 Tax=Bifidobacterium RepID=RS6_BIFLO
rpsF; SSU ribosomal protein S6P
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_068_000G1_scaffold_740_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

411..1067
DNA (657bp) protein (219aa)
Single-stranded DNA-binding protein n=5 Tax=Bifidobacterium longum RepID=D6ZXS6_BIFLJ
single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_068_000G1_scaffold_740_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


1128..1376
DNA (249bp) protein (83aa)
30S ribosomal protein S18 n=21 Tax=Bifidobacterium RepID=RS18_BIFLO
30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_068_000G1_scaffold_740_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


1396..1842
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=17 Tax=Bifidobacterium RepID=RL9_BIFLD
50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L3_068_000G1_scaffold_740_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2229..2489
DNA (261bp) protein (87aa)
PTS system HPr component n=18 Tax=Bifidobacterium RepID=B3DU41_BIFLD
PTS galactitol transporter subunit IIC
PTS galactitol transporter subunit IIC {ECO:0000313|EMBL:KEY23534.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_068_000G1_scaffold_740_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2489..4168
DNA (1680bp) protein (560aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
Phosphoenolpyruvate-protein phosphotransferase n=15 Tax=Bacteria RepID=B3DU40_BIFLD
PTS system enzyme I
L3_068_000G1_scaffold_740_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4402..5136
DNA (735bp) protein (245aa)
MIP family channel protein n=7 Tax=Bifidobacterium RepID=D6ZXT1_BIFLJ
MIP family channel protein
MIP family channel protein {ECO:0000313|EMBL:ADG99727.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_068_000G1_scaffold_740_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5220..7928)
DNA (2709bp) protein (903aa)
Copper-exporting ATPase {ECO:0000313|EMBL:EEQ54476.1}; EC=3.6.3.4 {ECO:0000313|EMBL:EEQ54476.1};; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
Copper-transporting ATPase n=3 Tax=Bifidobacterium longum RepID=E8MGJ1_BIFL2
copper-transporting ATPase
L3_068_000G1_scaffold_740_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8040..8321
DNA (282bp) protein (94aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=B3DU37_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN24245.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_068_000G1_scaffold_740_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8364..9239
DNA (876bp) protein (292aa)
Uncharacterized protein conserved in bacteria n=6 Tax=Bifidobacterium RepID=D6DAF5_BIFLN
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBK71158.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_068_000G1_scaffold_740_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9256..9738
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GTU0_BIFLS
hypothetical protein
RmuC domain protein {ECO:0000313|EMBL:EIJ22255.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_068_000G1_scaffold_740_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9735..10364
DNA (630bp) protein (210aa)
Uncharacterized protein n=3 Tax=Bifidobacterium longum RepID=C2GSZ2_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK71157.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_068_000G1_scaffold_740_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10458..11306
DNA (849bp) protein (283aa)
rRNA methylase n=9 Tax=Bifidobacterium RepID=B3DU34_BIFLD
spoU3; spou3
RNA methyltransferase {ECO:0000313|EMBL:KEY23527.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_068_000G1_scaffold_740_14
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11422..11772
DNA (351bp) protein (117aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MUZ2_9BIFI
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C
L3_068_000G1_scaffold_740_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11776..13317
DNA (1542bp) protein (514aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.- 6.3.5.7 6.3.5.6)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=14 Tax=Bifidobacterium RepID=GATA_BIFLD
L3_068_000G1_scaffold_740_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13343..14842
DNA (1500bp) protein (500aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=18 Tax=Bifidobacterium RepID=GATB_BIFLD
aspartyl/glutamyl-tRNA amidotransferase subunit B
L3_068_000G1_scaffold_740_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15138..16202
DNA (1065bp) protein (355aa)
Acetyltransferases, including N-acetylases of ribosomal proteins n=15 Tax=Bifidobacterium longum RepID=D6DAF0_BIFLN
acetyltransferase
GNAT family acetyltransferase {ECO:0000313|EMBL:KEY23523.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_068_000G1_scaffold_740_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16213..16527
DNA (315bp) protein (105aa)
Uncharacterized protein n=24 Tax=Bifidobacterium RepID=B3DU29_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD98648.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_068_000G1_scaffold_740_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16701..18554
DNA (1854bp) protein (618aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum RepID=B3DU28_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD98647.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_068_000G1_scaffold_740_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18773..20386
DNA (1614bp) protein (538aa)
Protoporphyrinogen oxidase n=18 Tax=Bifidobacterium RepID=B3DU27_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW43260.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_068_000G1_scaffold_740_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20592..22661
DNA (2070bp) protein (690aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
Transcription termination factor Rho n=15 Tax=Bifidobacterium RepID=B3DU26_BIFLD
transcription termination factor Rho
L3_068_000G1_scaffold_740_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22969..23358
DNA (390bp) protein (130aa)
Chorismate mutase n=18 Tax=Bifidobacterium RepID=B3DU25_BIFLD
chorismate mutase
Chorismate mutase {ECO:0000313|EMBL:ACD98644.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_068_000G1_scaffold_740_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23480..25564
DNA (2085bp) protein (695aa)
Uncharacterized protein n=3 Tax=Bifidobacterium longum subsp. longum RepID=T2I173_BIFLN
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ65909.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
hypothetical protein
L3_068_000G1_scaffold_740_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(25790..28525)
DNA (2736bp) protein (912aa)
Valine--tRNA ligase {ECO:0000256|SAAS:SAAS00105779}; EC=6.1.1.9 {ECO:0000256|SAAS:SAAS00105779};; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
Valine--tRNA ligase n=14 Tax=Bifidobacterium RepID=SYV_BIFLO
valS; vals
L3_068_000G1_scaffold_740_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28669..30195)
DNA (1527bp) protein (509aa)
ABC-type dipeptide transport system, periplasmic component n=9 Tax=Bifidobacterium longum RepID=D6DAE1_BIFLN
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEY23515.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_068_000G1_scaffold_740_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30257..30943)
DNA (687bp) protein (229aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
Endonuclease III n=16 Tax=Bifidobacterium RepID=B3DU21_BIFLD
endonuclease III
L3_068_000G1_scaffold_740_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31002..31802)
DNA (801bp) protein (267aa)
Transcriptional regulatory , C terminal family protein n=2 Tax=Bifidobacterium longum RepID=T2HZC4_BIFLN
Transcriptional regulatory , C terminal family protein {ECO:0000313|EMBL:CCK34215.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
response regulator receiver protein
L3_068_000G1_scaffold_740_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31964..32668)
DNA (705bp) protein (235aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum RepID=Q8G781_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN24227.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_068_000G1_scaffold_740_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32777..32866)
DNA (90bp) protein (30aa)
Putative manganese efflux pump MntP n=18 Tax=Bifidobacterium RepID=MNTP_BIFLD
hypothetical protein
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Displaying 29 items

View Taxonomy