ggKbase home page

L3_068_000G1_scaffold_869

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_869_1
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


3..368
DNA (366bp) protein (122aa)
30S ribosomal protein S1 n=16 Tax=Bacteroides RepID=E1WMG5_BACF6
rpsA; putative 30S ribosomal protein S1
S1 RNA binding domain protein {ECO:0000313|EMBL:EXY28526.1}; Flags: Fragment;; TaxID=1339284 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3397 T10.;"
L3_068_000G1_scaffold_869_2
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

518..1432
DNA (915bp) protein (305aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=1339279 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 20793-3.;"
Ribonuclease Z n=8 Tax=Bacteroides RepID=RNZ_BACFR
hypothetical protein
L3_068_000G1_scaffold_869_3
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1505..2017
DNA (513bp) protein (171aa)
RNA polymerase ECF-type sigma factor n=9 Tax=Bacteroides RepID=Q64XI1_BACFR
putative RNA polymerase ECF-type sigma factor
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:EYE47049.1}; TaxID=1339329 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. S23L17.;"
L3_068_000G1_scaffold_869_4
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2035..2448
DNA (414bp) protein (138aa)
Uncharacterized protein n=14 Tax=Bacteroides RepID=E1WMG8_BACF6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKA87504.1}; TaxID=1073387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 615.;"
L3_068_000G1_scaffold_869_5
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2477..2950
DNA (474bp) protein (158aa)
Uncharacterized protein n=5 Tax=Bacteroides fragilis RepID=Q64XH9_BACFR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD47797.1}; TaxID=295405 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain YCH46).;"
L3_068_000G1_scaffold_869_6
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3052..3837)
DNA (786bp) protein (262aa)
Uncharacterized protein n=12 Tax=Bacteroides RepID=E1WMH0_BACF6
hypothetical protein
MazG family protein {ECO:0000313|EMBL:EXY91750.1}; TaxID=1339316 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3998T(B)3.;"
L3_068_000G1_scaffold_869_7
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3843..4904)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=4 Tax=Bacteroides fragilis RepID=Q64XH7_BACFR
putative transmembrane zinc-binding protein
Uncharacterized protein {ECO:0000313|EMBL:EYE47053.1}; TaxID=1339329 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. S23L17.;"
L3_068_000G1_scaffold_869_8
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5021..6277
DNA (1257bp) protein (419aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1073387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 615.;"
Valine--tRNA ligase n=1 Tax=Bacteroides fragilis CAG:47 RepID=R6ZBV4_9BACE
Valyl tRNA synthetase suspected. See adjacent gene [L3_068_000G1_scaffold_869_9].
valyl-tRNA synthetase
L3_068_000G1_scaffold_869_9
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


6285..7583
DNA (1299bp) protein (433aa)
valS; putative valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1339280 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 2-F-2 #4.;"
Valine--tRNA ligase n=2 Tax=Bacteroides fragilis RepID=I9RI07_BACFG
L3_068_000G1_scaffold_869_10
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7701..9602
DNA (1902bp) protein (634aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1339280 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 2-F-2 #4.;"
Uncharacterized protein n=2 Tax=Bacteroides fragilis RepID=I3HRB2_BACFG
putative two-component sensor histidine kinase
L3_068_000G1_scaffold_869_11
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9568..9996)
DNA (429bp) protein (143aa)
Uncharacterized protein n=10 Tax=Bacteroides RepID=E1WMH4_BACF6
hypothetical protein
DNA-binding family protein {ECO:0000313|EMBL:EXZ54964.1}; TaxID=1339299 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3397 T14.;"
L3_068_000G1_scaffold_869_12
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10206..10826)
DNA (621bp) protein (207aa)
Putative uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_56FAA RepID=F7LLS5_9BACE
RNA polymerase sigma-70 factor, expansion family 1 {ECO:0000313|EMBL:EKA87497.1}; TaxID=1073387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 615.;"
putative RNA polymerase ECF-type sigma factor
L3_068_000G1_scaffold_869_13
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10892..11917
DNA (1026bp) protein (342aa)
Uncharacterized protein n=12 Tax=Bacteroides RepID=C6I529_9BACE
putative anti-sigma factor
FecR family protein {ECO:0000313|EMBL:EXZ29840.1}; TaxID=1339327 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. S36L11.;"
L3_068_000G1_scaffold_869_14
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12175..15477
DNA (3303bp) protein (1101aa)
SusC/RagA family TonB-linked outer membrane protein n=11 Tax=Bacteroides RepID=I3HRA8_BACFG
Putative outer membrane protein {ECO:0000313|EMBL:CBW21599.1}; TaxID=862962 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain 638R).;"
putative outer membrane protein
L3_068_000G1_scaffold_869_15
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15491..17011
DNA (1521bp) protein (507aa)
Uncharacterized protein n=10 Tax=Bacteroides RepID=E1WMH8_BACF6
hypothetical protein
Starch-binding associating with outer membrane family protein {ECO:0000313|EMBL:EYE47061.1}; TaxID=1339329 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. S23L17.;"
L3_068_000G1_scaffold_869_16
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17028..18119
DNA (1092bp) protein (364aa)
Uncharacterized protein n=10 Tax=Bacteroides RepID=Q64XG8_BACFR
putative endonuclease/exonuclease/phosphatase family protein
Endonuclease/Exonuclease/phosphatase family protein {ECO:0000313|EMBL:EYE56206.1}; TaxID=1339318 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. S6L5.;"
L3_068_000G1_scaffold_869_17
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18204..19277
DNA (1074bp) protein (358aa)
Uncharacterized protein n=12 Tax=Bacteroides RepID=Q64XG7_BACFR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIY99757.1}; TaxID=997883 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL07T12C05.;"
L3_068_000G1_scaffold_869_18
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19480..20082)
DNA (603bp) protein (201aa)
RNA polymerase ECF-type sigma factor n=13 Tax=Bacteroides RepID=Q64XG6_BACFR
putative RNA polymerase ECF-type sigma factor
RNA polymerase sigma-70 factor, expansion 1 family protein {ECO:0000313|EMBL:EYA40207.1}; TaxID=1339279 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 20793-3.;"
L3_068_000G1_scaffold_869_19
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20191..21198
DNA (1008bp) protein (336aa)
Sigma factor regulatory protein, FecR/PupR family n=10 Tax=Bacteroides RepID=D1JJG2_9BACE
putative anti-sigma factor
FecR family protein {ECO:0000313|EMBL:EYB10625.1}; TaxID=1339310 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3783N1-6.;"
L3_068_000G1_scaffold_869_20
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21367..24747
DNA (3381bp) protein (1127aa)
SusC/RagA family TonB-linked outer membrane protein n=10 Tax=Bacteroides RepID=C6I522_9BACE
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EKA87489.1}; TaxID=1073387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 615.;"
putative TonB-dependent outer membrane receptor protein
L3_068_000G1_scaffold_869_21
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24754..26394
DNA (1641bp) protein (547aa)
Uncharacterized protein n=11 Tax=Bacteroides RepID=C6I521_9BACE
putative outer membrane protein
Starch-binding associating with outer membrane family protein {ECO:0000313|EMBL:EYE47067.1}; TaxID=1339329 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. S23L17.;"
L3_068_000G1_scaffold_869_22
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26411..27301
DNA (891bp) protein (297aa)
Uncharacterized protein n=2 Tax=Bacteroides fragilis RepID=I9K6X3_BACFG
putative arylsulfatase precursor
Type I phosphodiesterase / nucleotide pyrophosphatase family protein {ECO:0000313|EMBL:EXZ45814.1}; TaxID=1339280 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 2-F-2 #4.;"
Displaying 22 items

View Taxonomy