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L3_068_000G1_scaffold_1607

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000G1_scaffold_1607_1
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(159..2123)
DNA (1965bp) protein (655aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
Lysine--tRNA ligase n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z8F8_9ACTN
lysyl-tRNA synthetase
L3_068_000G1_scaffold_1607_2
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(2203..2673)
DNA (471bp) protein (157aa)
Transcription elongation factor GreA n=2 Tax=Collinsella RepID=A4E9C2_9ACTN
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
transcription elongation factor GreA
L3_068_000G1_scaffold_1607_3
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(2780..3055)
DNA (276bp) protein (92aa)
Sec-independent protein translocase protein TatA n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZAY0_9ACTN
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
sec-independent translocation protein mttA/Hcf106
L3_068_000G1_scaffold_1607_4
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(3294..4190)
DNA (897bp) protein (299aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZNN7_9ACTN
L3_068_000G1_scaffold_1607_5
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(4193..4489)
DNA (297bp) protein (99aa)
Uncharacterized protein n=2 Tax=Collinsella RepID=A4E9B9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35982.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_068_000G1_scaffold_1607_6
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(4673..5119)
DNA (447bp) protein (149aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z8G3_9ACTN
D-tyrosyl-tRNA(Tyr) deacylase
L3_068_000G1_scaffold_1607_7
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(5123..5764)
DNA (642bp) protein (214aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Non-canonical purine NTP pyrophosphatase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZHE5_9ACTN
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
L3_068_000G1_scaffold_1607_8
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(5906..6631)
DNA (726bp) protein (242aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
RNAse PH (EC:2.7.7.56)
Ribonuclease PH n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9B7_9ACTN
L3_068_000G1_scaffold_1607_9
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6686..7570)
DNA (885bp) protein (295aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZNP3_9ACTN
L3_068_000G1_scaffold_1607_10
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(7622..8575)
DNA (954bp) protein (318aa)
HAD hydrolase family IIB n=1 Tax=Collinsella sp. CAG:166 RepID=R6A4D6_9ACTN
HAD hydrolase family IIB {ECO:0000313|EMBL:CDA35987.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Haloacid dehalogenase domain-containing protein hydrolase type 3
L3_068_000G1_scaffold_1607_11
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(8641..10203)
DNA (1563bp) protein (521aa)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.- {ECO:0000256|HAMAP-Rule:MF_00208};; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
UDP-N-acetylmuramyl-tripeptide synthetase n=1 Tax=Collinsella sp. CAG:398 RepID=R7AJ64_9ACTN
UDP-N-acetylmuramyl-tripeptide synthetase
L3_068_000G1_scaffold_1607_12
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10315..12195)
DNA (1881bp) protein (627aa)
Asparagine synthetase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZHF4_9ACTN
Asparagine synthetase {ECO:0000313|EMBL:CDA35989.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
asparagine synthase
Displaying 12 items

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