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L3_068_000M1_scaffold_1420

Search features with annotation key words

Displaying items 1-30 of 101 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_1420_1
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(268..912)
DNA (645bp) protein (215aa)
Undecaprenyl-phosphate galactose phosphotransferase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GVW1_9FIRM
Undecaprenyl-phosphate galactose phosphotransferase {ECO:0000313|EMBL:CDB25431.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
undecaprenyl-phosphate N-acetylgalactosaminyl-1-phosphate transferase
L3_068_000M1_scaffold_1420_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1473..1859
DNA (387bp) protein (129aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Clostridium sp. CAG:7 RepID=R5IHC2_9CLOT
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CCY39709.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
diguanylate cyclase (GGDEF) domain
L3_068_000M1_scaffold_1420_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2232..3452
DNA (1221bp) protein (407aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU9_9FIRM
L3_068_000M1_scaffold_1420_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3604..5007
DNA (1404bp) protein (468aa)
DNA repair protein radA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU8_9FIRM
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA repair protein RadA
L3_068_000M1_scaffold_1420_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5047..5961
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76605.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_068_000M1_scaffold_1420_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6287..7276
DNA (990bp) protein (330aa)
Phage integrase SAM-like domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU1_9FIRM
Phage integrase SAM-like domain protein {ECO:0000313|EMBL:EFB76599.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
xerC; Tyrosine recombinase XerC
L3_068_000M1_scaffold_1420_7
unknown

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comp(7244..7903)
DNA (660bp) protein (220aa)

This feature has no annotations

L3_068_000M1_scaffold_1420_8
unknown

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comp(7903..8367)
DNA (465bp) protein (155aa)

This feature has no annotations

L3_068_000M1_scaffold_1420_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8445..8807)
DNA (363bp) protein (121aa)
Preprotein translocase, YajC subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT8_9FIRM
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EFB76596.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
preprotein translocase, YajC subunit
L3_068_000M1_scaffold_1420_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8909..10042)
DNA (1134bp) protein (378aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT7_9FIRM
L3_068_000M1_scaffold_1420_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10176..11204)
DNA (1029bp) protein (343aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT5_9FIRM
L3_068_000M1_scaffold_1420_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11690..12769
DNA (1080bp) protein (360aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EFB76591.1}; EC=1.2.1.11 {ECO:0000313|EMBL:EFB76591.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
aspartate semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT3_9FIRM
L3_068_000M1_scaffold_1420_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12802..13692
DNA (891bp) protein (297aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT2_9FIRM
L3_068_000M1_scaffold_1420_14

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13778..14548
DNA (771bp) protein (257aa)
dihydrodipicolinate reductase (EC:1.3.1.26)
Dihydrodipicolinate reductase (Fragment) n=1 Tax=human gut metagenome RepID=K1V4G0_9ZZZZ
Dihydrodipicolinate reductase {ECO:0000313|EMBL:EKC78786.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_068_000M1_scaffold_1420_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14539..15783
DNA (1245bp) protein (415aa)
Bacterial capsule synthesis protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT0_9FIRM
Bacterial capsule synthesis protein {ECO:0000313|EMBL:EFB76588.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation)
L3_068_000M1_scaffold_1420_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15807..16262
DNA (456bp) protein (152aa)
ACT domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS9_9FIRM
ACT domain protein {ECO:0000313|EMBL:EFB76587.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Aspartokinases
L3_068_000M1_scaffold_1420_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16526..17287)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75674.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_068_000M1_scaffold_1420_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17366..18181)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM90_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75675.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_068_000M1_scaffold_1420_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18223..19398)
DNA (1176bp) protein (392aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM91_9FIRM
L3_068_000M1_scaffold_1420_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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19815..21563
DNA (1749bp) protein (583aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM93_9FIRM
L3_068_000M1_scaffold_1420_21

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21575..22036
DNA (462bp) protein (154aa)
LuxS protein involved in autoinducer AI2 synthesis (EC:4.4.1.21)
S-ribosylhomocysteinase LuxS n=1 Tax=human gut metagenome RepID=K1U4E6_9ZZZZ
S-ribosylhomocysteinase LuxS {ECO:0000313|EMBL:EKC80132.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_068_000M1_scaffold_1420_22
unknown

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comp(22185..22673)
DNA (489bp) protein (163aa)

This feature has no annotations

L3_068_000M1_scaffold_1420_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22898..23419)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76726.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_068_000M1_scaffold_1420_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23507..24736)
DNA (1230bp) protein (410aa)
Gamma-glutamylcysteine synthetase (EC:6.3.2.2)
Putative glutamate--cysteine ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL70_9FIRM
Putative glutamate--cysteine ligase {ECO:0000313|EMBL:EFB76728.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_068_000M1_scaffold_1420_25

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comp(24942..25913)
DNA (972bp) protein (324aa)
T4 family peptidase (Fragment) n=1 Tax=human gut metagenome RepID=K1SCK6_9ZZZZ
T4 family peptidase {ECO:0000313|EMBL:EKC53164.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L-aminopeptidase/D-esterase
L3_068_000M1_scaffold_1420_26
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26135..26638)
DNA (504bp) protein (168aa)
Transcriptional regulator CarD family n=1 Tax=Roseburia sp. CAG:380 RepID=R6VQY1_9FIRM
Transcriptional regulator CarD family {ECO:0000313|EMBL:CDE70286.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
CarD-like/TRCF domain.
L3_068_000M1_scaffold_1420_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26791..27477)
DNA (687bp) protein (229aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM43_9FIRM
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
conserved hypothetical integral membrane protein TIGR00023
L3_068_000M1_scaffold_1420_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27499..28830)
DNA (1332bp) protein (444aa)
GTPase Der n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM44_9FIRM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribosome-associated GTPase EngA
L3_068_000M1_scaffold_1420_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28891..30243)
DNA (1353bp) protein (451aa)
Putative FeS-containing Cyanobacterial-specific oxidoreductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM45_9FIRM
Putative FeS-containing Cyanobacterial-specific oxidoreductase {ECO:0000313|EMBL:EFB75630.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Fe-S oxidoreductase, related to NifB/MoaA family
L3_068_000M1_scaffold_1420_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(30327..30515)
DNA (189bp) protein (63aa)
50S ribosomal protein L32 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM46_9FIRM
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
Displaying items 1-30 of 101 in total

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