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L3_068_000M1_scaffold_86

Search features with annotation key words

Displaying items 1-30 of 226 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_86_1
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..608
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VDL6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78872.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_068_000M1_scaffold_86_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

750..2954
DNA (2205bp) protein (735aa)
ABC-type multidrug transport system ATPase and permease components n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN29_9FIRM
ABC-type multidrug transport system ATPase and permease components {ECO:0000313|EMBL:CCZ79480.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC-type multidrug transport system, ATPase and permease components
L3_068_000M1_scaffold_86_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2956..4800
DNA (1845bp) protein (615aa)
ABC-type multidrug transport system ATPase and permease components n=1 Tax=Roseburia sp. CAG:18 RepID=R5V7S1_9FIRM
ABC-type multidrug transport system ATPase and permease components {ECO:0000313|EMBL:CCZ79481.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative ABC transporter
L3_068_000M1_scaffold_86_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4926..5726
DNA (801bp) protein (267aa)
Sporulation transcriptional activator Spo0A n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFJ4_9FIRM
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
sporulation transcriptional activator Spo0A
L3_068_000M1_scaffold_86_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5740..7188
DNA (1449bp) protein (483aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
glycogen/starch synthases, ADP-glucose type (EC:2.4.1.21)
Glycogen synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMH8_9FIRM
L3_068_000M1_scaffold_86_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7243..8154)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UUU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79484.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_068_000M1_scaffold_86_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8294..9367)
DNA (1074bp) protein (358aa)
Ornithine carbamoyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN36_9FIRM
Ornithine carbamoyltransferase {ECO:0000313|EMBL:CCZ79485.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ornithine carbamoyltransferase
L3_068_000M1_scaffold_86_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9410..10189)
DNA (780bp) protein (260aa)
Ornithine carbamoyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V7S6_9FIRM
Ornithine carbamoyltransferase {ECO:0000313|EMBL:CCZ79486.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ornithine carbamoyltransferase
L3_068_000M1_scaffold_86_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10183..11007)
DNA (825bp) protein (275aa)
ABC-type spermidine/putrescine transport system permease component I n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFJ8_9FIRM
ABC-type spermidine/putrescine transport system permease component I {ECO:0000313|EMBL:CCZ79487.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC-type spermidine/putrescine transport system, permease component I
L3_068_000M1_scaffold_86_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11000..12073)
DNA (1074bp) protein (358aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
spermidine/putrescine ABC transporter ATP-binding subunit (EC:3.6.3.31)
Spermidine/putrescine ABC transporter ATP-binding subunit n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMI4_9FIRM
L3_068_000M1_scaffold_86_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12086..12625)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UUV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79489.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted transcriptional regulators
L3_068_000M1_scaffold_86_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13018..13338
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN43_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79490.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_068_000M1_scaffold_86_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13328..13855
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V7T3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79491.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
HD domain.
L3_068_000M1_scaffold_86_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13852..14511
DNA (660bp) protein (220aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFK5_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CCZ79492.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_068_000M1_scaffold_86_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14551..15930
DNA (1380bp) protein (460aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMI8_9FIRM
L3_068_000M1_scaffold_86_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16232..17323
DNA (1092bp) protein (364aa)
aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase (Non-peptidoglycan organisms) n=1 Tax=Roseburia sp. CAG:18 RepID=R5UUW0_9FIRM
Aspartate-semialdehyde dehydrogenase (Non-peptidoglycan organisms) {ECO:0000313|EMBL:CCZ79494.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_068_000M1_scaffold_86_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17461..18822
DNA (1362bp) protein (454aa)
Predicted ATPase (AAA+ superfamily) n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN50_9FIRM
Predicted ATPase (AAA+ superfamily) {ECO:0000313|EMBL:CCZ79495.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted ATPase (AAA+ superfamily)
L3_068_000M1_scaffold_86_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18850..22377
DNA (3528bp) protein (1176aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA topoisomerase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V7W0_9FIRM
DNA topoisomerase
L3_068_000M1_scaffold_86_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22397..23077
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFM6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79497.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_068_000M1_scaffold_86_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23200..23892
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UML2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79498.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
NifU homolog involved in Fe-S cluster formation
L3_068_000M1_scaffold_86_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23913..24926
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UUY1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79499.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_068_000M1_scaffold_86_22
unknown

Not on your lists

comp(24948..25235)
DNA (288bp) protein (96aa)

This feature has no annotations

L3_068_000M1_scaffold_86_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26264..27433
DNA (1170bp) protein (390aa)
RNA polymerase sigma factor SigA n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP70_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
sigma-70 family RNA polymerase sigma factor
L3_068_000M1_scaffold_86_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27508..28635
DNA (1128bp) protein (376aa)
Esterase/lipase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L273_9FIRM
Esterase/lipase
Esterase/lipase {ECO:0000313|EMBL:CBL13713.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_000M1_scaffold_86_25
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28897..29811
DNA (915bp) protein (305aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K7R8_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EGN41368.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_068_000M1_scaffold_86_26
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29827..30729
DNA (903bp) protein (301aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K7R7_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EGN41367.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_068_000M1_scaffold_86_27
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30789..32567
DNA (1779bp) protein (593aa)
Extracellular solute-binding protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HXF6_9FIRM
Extracellular solute-binding protein {ECO:0000313|EMBL:CCY32839.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L3_068_000M1_scaffold_86_28
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32639..34189)
DNA (1551bp) protein (517aa)
Two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FNN4_9CLOT
Two component transcriptional regulator, AraC family protein {ECO:0000313|EMBL:EMS70744.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
L3_068_000M1_scaffold_86_29
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34207..35985)
DNA (1779bp) protein (593aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:100 RepID=R7R2N4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF44378.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
hypothetical protein
L3_068_000M1_scaffold_86_30
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

Not on your lists

36158..38494
DNA (2337bp) protein (779aa)
Alpha-glucosidases family 31 of glycosyl hydrolases n=1 Tax=Firmicutes bacterium CAG:95 RepID=R7N4H8_9FIRM
Alpha-glucosidases family 31 of glycosyl hydrolases {ECO:0000313|EMBL:CDF08389.1}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
Alpha-glucosidases, family 31 of glycosyl hydrolases
Displaying items 1-30 of 226 in total

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