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L3_068_000M1_scaffold_177

Search features with annotation key words

Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_177_1
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

Not on your lists

comp(1..519)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R7AUX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD47072.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
hypothetical protein
L3_068_000M1_scaffold_177_2
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(617..1924)
DNA (1308bp) protein (436aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
Histidine kinase n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T4F9_ROSHA
histidine kinase
L3_068_000M1_scaffold_177_3
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2064..2729)
DNA (666bp) protein (222aa)
DNA-binding response regulator n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T4G0_ROSHA
DNA-binding response regulator
DNA-binding response regulator {ECO:0000313|EMBL:AEN97765.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_068_000M1_scaffold_177_4
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2942..3298
DNA (357bp) protein (119aa)
DNA-binding helix-turn-helix protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FW12_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEG93176.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Predicted transcriptional regulators
L3_068_000M1_scaffold_177_5
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3484..4257)
DNA (774bp) protein (258aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T2WIG0_CLODI
RLX protein {ECO:0000313|EMBL:KJF41515.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_068_000M1_scaffold_177_6
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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4682..5617
DNA (936bp) protein (312aa)
Putative smf protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KTK5_OSCVS
putative smf protein
Putative smf protein {ECO:0000313|EMBL:BAL00260.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_068_000M1_scaffold_177_7
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5688..5891)
DNA (204bp) protein (68aa)
Putative uncharacterized protein n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DJN1_CLOSC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK77905.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_068_000M1_scaffold_177_8
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6169..7635)
DNA (1467bp) protein (489aa)
ParB/RepB/Spo0J family partition domain protein n=1 Tax=Clostridium difficile P1 RepID=T4H3I3_CLODI
DNA-binding protein {ECO:0000313|EMBL:KJF41477.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
parB-like partition protein
L3_068_000M1_scaffold_177_9
unknown

Not on your lists

7658..7840
DNA (183bp) protein (61aa)

This feature has no annotations

L3_068_000M1_scaffold_177_10
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7887..9062
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7MBT9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI97266.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
L3_068_000M1_scaffold_177_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9491..11278
DNA (1788bp) protein (596aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7MBU1_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY82564.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_068_000M1_scaffold_177_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11866..12657)
DNA (792bp) protein (264aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K1U3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL00242.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_068_000M1_scaffold_177_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12674..14482)
DNA (1809bp) protein (603aa)
Heparinase II/III-like protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZJR8_9FIRM
Heparinase II/III-like protein {ECO:0000313|EMBL:EFQ06607.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Heparinase II/III-like protein.
L3_068_000M1_scaffold_177_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14466..15749)
DNA (1284bp) protein (428aa)
Response regulator receiver domain protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZJR7_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EDP22290.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
L3_068_000M1_scaffold_177_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15763..17568)
DNA (1806bp) protein (602aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4KCV4_9FIRM
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain.
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain {ECO:0000313|EMBL:CBL02667.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_068_000M1_scaffold_177_16
unknown

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17601..17894
DNA (294bp) protein (98aa)

This feature has no annotations

L3_068_000M1_scaffold_177_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17947..19293
DNA (1347bp) protein (449aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K1U7_9FIRM
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL00246.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_068_000M1_scaffold_177_18
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19407..20324
DNA (918bp) protein (306aa)
ABC transporter, permease protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZJR2_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFQ06601.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_068_000M1_scaffold_177_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20343..21206
DNA (864bp) protein (288aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K1U9_9FIRM
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL00248.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_068_000M1_scaffold_177_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21484..22647
DNA (1164bp) protein (388aa)
Glycosyl Hydrolase Family 88 n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4KCV9_9FIRM
Glycosyl Hydrolase Family 88.
Glycosyl Hydrolase Family 88 {ECO:0000313|EMBL:CBL02672.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_068_000M1_scaffold_177_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22647..24359
DNA (1713bp) protein (571aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S907_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP22300.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
hypothetical protein
L3_068_000M1_scaffold_177_22
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24574..26322
DNA (1749bp) protein (583aa)
Beta-galactosidase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I575_9FIRM
Beta-galactosidase {ECO:0000313|EMBL:CDE46646.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
beta-galactosidase
L3_068_000M1_scaffold_177_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26383..27378)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75926.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_068_000M1_scaffold_177_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27371..28114)
DNA (744bp) protein (248aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ0_9FIRM
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EFB75925.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
short-chain dehydrogenase/reductase SDR
L3_068_000M1_scaffold_177_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28128..28544)
DNA (417bp) protein (139aa)
MaoC-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMY9_9FIRM
MaoC-like protein {ECO:0000313|EMBL:EFB75924.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
MaoC domain-containing protein dehydratase
L3_068_000M1_scaffold_177_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28626..28865)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75923.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative acyl carrier protein
L3_068_000M1_scaffold_177_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29109..29456)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMY7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75922.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_068_000M1_scaffold_177_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29518..32157
DNA (2640bp) protein (880aa)
Membrane carboxypeptidase (penicillin-binding protein) (EC:2.4.1.- 3.4.-.-)
Transglycosylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMY5_9FIRM
Transglycosylase {ECO:0000313|EMBL:EFB75920.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_068_000M1_scaffold_177_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32437..32910
DNA (474bp) protein (158aa)
ACT domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMY3_9FIRM
ACT domain protein {ECO:0000313|EMBL:EFB75918.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
amino acid-binding ACT protein
L3_068_000M1_scaffold_177_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33047..34276
DNA (1230bp) protein (410aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMY2_9FIRM
Displaying items 1-30 of 82 in total

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