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L3_068_000M1_scaffold_211

Search features with annotation key words

Displaying items 1-30 of 121 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_211_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(110..1609)
DNA (1500bp) protein (500aa)
Tat pathway signal sequence domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPC8_9FIRM
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EFB75390.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_068_000M1_scaffold_211_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1599..2729)
DNA (1131bp) protein (377aa)
dTDP-4-amino-4,6-dideoxy-D-glucose transaminase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPC9_9FIRM
dTDP-4-amino-4,6-dideoxy-D-glucose transaminase {ECO:0000313|EMBL:EFB75391.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
TDP-4-oxo-6-deoxy-D-glucose transaminase
L3_068_000M1_scaffold_211_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2833..3327)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75392.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_068_000M1_scaffold_211_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3584..4750
DNA (1167bp) protein (389aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EFB75393.1}; EC=2.6.1.- {ECO:0000313|EMBL:EFB75393.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Aminotransferase, class I/II n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPD1_9FIRM
Aspartate/tyrosine/aromatic aminotransferase
L3_068_000M1_scaffold_211_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5011..5379)
DNA (369bp) protein (123aa)
Transcriptional regulator, BlaI/MecI/CopY family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPD2_9FIRM
Transcriptional regulator, BlaI/MecI/CopY family {ECO:0000313|EMBL:EFB75394.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Penicillinase repressor.
L3_068_000M1_scaffold_211_6

Not on your lists

comp(5691..6380)
DNA (690bp) protein (230aa)
RNA polymerase, sigma 28 subunit, SigK n=1 Tax=human gut metagenome RepID=K1VBW0_9ZZZZ
RNA polymerase, sigma 28 subunit, SigK {ECO:0000313|EMBL:EKC81456.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
RNA polymerase sigma 28 subunit SigK
L3_068_000M1_scaffold_211_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6551..7513)
DNA (963bp) protein (321aa)
K+-dependent Na+/Ca+ exchanger related-protein n=2 Tax=Faecalibacterium prausnitzii RepID=D4KAX6_9FIRM
K+-dependent Na+/Ca+ exchanger related-protein
K+-dependent Na+/Ca+ exchanger family protein {ECO:0000313|EMBL:EDP22062.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L3_068_000M1_scaffold_211_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8135..8569
DNA (435bp) protein (145aa)
Transcriptional regulator, AsnC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ00_9FIRM
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EFB75192.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Transcriptional regulators
L3_068_000M1_scaffold_211_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8581..9015
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75193.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_068_000M1_scaffold_211_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9025..10014
DNA (990bp) protein (330aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB75194.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB75194.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ02_9FIRM
Predicted glycosyltransferases
L3_068_000M1_scaffold_211_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10451..12523)
DNA (2073bp) protein (691aa)
translation elongation factor 2 (EF-2/EF-G) (EC:3.6.5.3)
Putative translation elongation factor G n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR61_9FIRM
Putative translation elongation factor G {ECO:0000313|EMBL:EFB74908.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_068_000M1_scaffold_211_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12967..14223)
DNA (1257bp) protein (419aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR95_9FIRM
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EFB74797.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_068_000M1_scaffold_211_13
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14352..15164)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Lachnospiraceae bacterium NK4A179 RepID=UPI0003B328EE
Prepilin-type cleavage/methylation protein {ECO:0000313|EMBL:ERI66381.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
L3_068_000M1_scaffold_211_14
unknown

Not on your lists

comp(15161..15547)
DNA (387bp) protein (129aa)

This feature has no annotations

L3_068_000M1_scaffold_211_15
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15554..16384)
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WLM3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX77958.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
L3_068_000M1_scaffold_211_16
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16412..27148)
DNA (10737bp) protein (3579aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6SGQ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC54561.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
hypothetical protein
L3_068_000M1_scaffold_211_17
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27435..27914
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6TJP8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC58962.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
L3_068_000M1_scaffold_211_18
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27901..28692
DNA (792bp) protein (264aa)
Type IV prepilin peptidase n=1 Tax=Clostridium sp. D5 RepID=F0YWU3_9CLOT
Type IV prepilin peptidase {ECO:0000313|EMBL:EGB93431.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
prepilin peptidase
L3_068_000M1_scaffold_211_19
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28891..30102
DNA (1212bp) protein (404aa)
Bacterial type II secretion system domain protein F n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MCL0_9FIRM
Bacterial type II secretion system domain protein F {ECO:0000313|EMBL:EDR97680.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
putative type II secretion pathway protein XcpS
L3_068_000M1_scaffold_211_20
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30301..31194
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CGA9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI66376.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
L3_068_000M1_scaffold_211_21
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31233..31802
DNA (570bp) protein (190aa)
Uncharacterized protein n=2 Tax=Dorea RepID=R6SG65_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC58955.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
L3_068_000M1_scaffold_211_22
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31814..32587
DNA (774bp) protein (258aa)
Uncharacterized protein n=2 Tax=Dorea RepID=R6TJN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC58952.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
hypothetical protein
L3_068_000M1_scaffold_211_23
Anaerostipes sp. CAG:276, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32584..34272
DNA (1689bp) protein (563aa)
Type II/IV secretion system protein n=2 Tax=Anaerostipes RepID=B0MCL3_9FIRM
Type II/IV secretion system protein {ECO:0000313|EMBL:CDC35095.1}; TaxID=1262699 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes; environmental samples.;" source="Anaerostipes sp. CAG:276.;"
type IV pilus assembly protein PilB
L3_068_000M1_scaffold_211_24
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34503..35552
DNA (1050bp) protein (350aa)
Twitching motility protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KGD6_9FIRM
Twitching motility protein {ECO:0000313|EMBL:EGN34205.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
pilT; pili retraction protein PilT
L3_068_000M1_scaffold_211_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35781..36224)
DNA (444bp) protein (148aa)
Toxin secretion/phage lysis holin n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLA8_9FIRM
Toxin secretion/phage lysis holin {ECO:0000313|EMBL:EFB76766.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
putative holin
L3_068_000M1_scaffold_211_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36224..36847)
DNA (624bp) protein (208aa)
Peptidase, M23 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRE6_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:EFB74672.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_068_000M1_scaffold_211_27
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36850..38301)
DNA (1452bp) protein (484aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KP99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS48183.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
L3_068_000M1_scaffold_211_28
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38321..39907)
DNA (1587bp) protein (529aa)
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7AT52_9FIRM
TWA4_scaffold00001, whole genome shotgun sequence {ECO:0000313|EMBL:KIR03812.1}; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
hypothetical protein
L3_068_000M1_scaffold_211_29
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40033..40380)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RKB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC49333.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L3_068_000M1_scaffold_211_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40384..41805)
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRA5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74807.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phage tape measure
Displaying items 1-30 of 121 in total

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