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L3_068_000M1_scaffold_222

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_222_1
unknown

Not on your lists

comp(1457..1579)
DNA (123bp) protein (41aa)

This feature has no annotations

L3_068_000M1_scaffold_222_2
unknown

Not on your lists

1635..1766
DNA (132bp) protein (44aa)

This feature has no annotations

L3_068_000M1_scaffold_222_3
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2756..3223)
DNA (468bp) protein (156aa)
SsrA-binding protein n=4 Tax=Eubacterium RepID=C4Z971_EUBR3
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_068_000M1_scaffold_222_4
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3454..5604)
DNA (2151bp) protein (717aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Ribonuclease R n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z970_EUBR3
ribonuclease R
L3_068_000M1_scaffold_222_5
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5769..6008)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6T9G3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68865.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
hypothetical protein
L3_068_000M1_scaffold_222_6
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6152..6646)
DNA (495bp) protein (165aa)
Large conductance mechanosensitive channel protein n=1 Tax=Eubacterium sp. CAG:86 RepID=R5DZS9_9FIRM
Large-conductance mechanosensitive channel {ECO:0000256|SAAS:SAAS00023935}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
Large-conductance mechanosensitive channel
L3_068_000M1_scaffold_222_7
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6872..8323)
DNA (1452bp) protein (484aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172, ECO:0000313|EMBL:CBK93513.1}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172, ECO:0000313|EMBL:CBK93513.1};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Adenylosuccinate lyase n=3 Tax=Eubacterium RepID=C4Z960_EUBR3
adenylosuccinate lyase
L3_068_000M1_scaffold_222_8
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8337..9899)
DNA (1563bp) protein (521aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Amidophosphoribosyltransferase n=2 Tax=Eubacterium RepID=C4Z959_EUBR3
amidophosphoribosyltransferase
L3_068_000M1_scaffold_222_9
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9949..10824)
DNA (876bp) protein (292aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=3 Tax=Eubacterium RepID=C4Z958_EUBR3
phosphoribosylaminoimidazole-succinocarboxamide synthase
L3_068_000M1_scaffold_222_10
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11047..12588)
DNA (1542bp) protein (514aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=4 Tax=Eubacterium RepID=C4Z957_EUBR3
L3_068_000M1_scaffold_222_11
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12766..13515)
DNA (750bp) protein (250aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Triosephosphate isomerase n=4 Tax=Eubacterium RepID=C4Z956_EUBR3
tpiA; triosephosphate isomerase
L3_068_000M1_scaffold_222_12
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13586..14818)
DNA (1233bp) protein (411aa)
3-phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Phosphoglycerate kinase n=3 Tax=Eubacterium RepID=D4JIS0_9FIRM
L3_068_000M1_scaffold_222_13
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15010..16026)
DNA (1017bp) protein (339aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=5 Tax=root RepID=C4Z954_EUBR3
glyceraldehyde-3-phosphate dehydrogenase, type I
L3_068_000M1_scaffold_222_14
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16343..17149
DNA (807bp) protein (269aa)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z952_EUBR3
histidinol phosphate phosphatase HisJ family
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:ACR75274.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_068_000M1_scaffold_222_15
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17854..19161)
DNA (1308bp) protein (436aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838}; Short=NAPRTase {ECO:0000256|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Nicotinate phosphoribosyltransferase n=2 Tax=Eubacterium rectale RepID=C4Z951_EUBR3
nicotinate phosphoribosyltransferase
L3_068_000M1_scaffold_222_16
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19331..23134)
DNA (3804bp) protein (1268aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:CBK90097.1}; EC=6.3.5.3 {ECO:0000313|EMBL:CBK90097.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3V7_9FIRM
L3_068_000M1_scaffold_222_17
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23387..24277
DNA (891bp) protein (297aa)
Transcriptional regulatory protein, LysR family n=2 Tax=Eubacterium RepID=C4Z949_EUBR3
LysR family transcriptional regulator
Transcriptional regulatory protein, LysR family {ECO:0000313|EMBL:ACR75271.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_068_000M1_scaffold_222_18
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24248..26623)
DNA (2376bp) protein (792aa)
Putative ATP-dependent DNA-repair helicase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z948_EUBR3
putative ATP-dependent DNA-repair helicase
Putative ATP-dependent DNA-repair helicase {ECO:0000313|EMBL:ACR75270.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_068_000M1_scaffold_222_19
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26771..27004)
DNA (234bp) protein (78aa)
Uncharacterized protein n=4 Tax=Eubacterium RepID=R6TLU2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75269.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_068_000M1_scaffold_222_20
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27281..28186)
DNA (906bp) protein (302aa)
Transcriptional regulator n=1 Tax=Eubacterium rectale M104/1 RepID=D4JIS9_9FIRM
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CBK93526.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_068_000M1_scaffold_222_21
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28279..29040)
DNA (762bp) protein (254aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Ribonuclease HII n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z936_EUBR3
rnhB; ribonuclease HII
L3_068_000M1_scaffold_222_22
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29084..29923)
DNA (840bp) protein (280aa)
Ribosome biogenesis GTPase A n=1 Tax=Eubacterium rectale CAG:36 RepID=R6UDD1_9FIRM
ribosome biogenesis GTP-binding protein YlqF
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_068_000M1_scaffold_222_23
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29963..30547)
DNA (585bp) protein (195aa)
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042, ECO:0000313|EMBL:CBK90104.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Signal peptidase I n=3 Tax=Eubacterium rectale RepID=C4Z934_EUBR3
L3_068_000M1_scaffold_222_24
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(30693..31046)
DNA (354bp) protein (118aa)
50S ribosomal protein L19 n=3 Tax=Eubacterium RepID=D4JIT3_9FIRM
ribosomal protein L19, bacterial type
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_068_000M1_scaffold_222_25
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31188..32804)
DNA (1617bp) protein (539aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014918}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014917};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Eubacterium rectale CAG:36 RepID=R6T9B2_9FIRM
tRNA (guanine-N1)-methyltransferase
L3_068_000M1_scaffold_222_26
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32912..33418)
DNA (507bp) protein (169aa)
Ribosome maturation factor RimM n=2 Tax=Eubacterium rectale RepID=C4Z931_EUBR3
rimM; 16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_068_000M1_scaffold_222_27
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33491..33721)
DNA (231bp) protein (77aa)
UPF0109 protein EUBREC_1507 n=4 Tax=Eubacterium RepID=C4Z930_EUBR3
RNA-binding protein (KH domain)
UPF0109 protein EUBREC_1507 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_068_000M1_scaffold_222_28
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(33739..33984)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=4 Tax=Eubacterium RepID=RS16_EUBR3
SSU ribosomal protein S16P
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_068_000M1_scaffold_222_29
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(34081..35457)
DNA (1377bp) protein (459aa)
Signal recognition particle protein n=3 Tax=Eubacterium RepID=C4Z928_EUBR3
signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_068_000M1_scaffold_222_30
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35459..35803)
DNA (345bp) protein (115aa)
UPF0122 protein EUBREC_1504 n=4 Tax=Eubacterium RepID=Y1504_EUBR3
hypothetical protein
UPF0122 protein ERE_15810 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Displaying items 1-30 of 74 in total

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