ggKbase home page

L3_068_000M1_scaffold_247

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_247_1
unknown

Not on your lists

1..138
DNA (138bp) protein (46aa)

This feature has no annotations

L3_068_000M1_scaffold_247_2
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

155..2356
DNA (2202bp) protein (734aa)
Endo-1 4-beta-xylanase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C784_9CLOT
Endo-1 4-beta-xylanase {ECO:0000313|EMBL:CDD73951.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
glycoside hydrolase family protein
L3_068_000M1_scaffold_247_3
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2384..4072
DNA (1689bp) protein (563aa)
Diguanylate cyclase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C877_9CLOT
Diguanylate cyclase {ECO:0000313|EMBL:CDD73952.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
diguanylate cyclase
L3_068_000M1_scaffold_247_4
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4056..4460
DNA (405bp) protein (135aa)
Diguanylate cyclase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C877_9CLOT
Diguanylate cyclase {ECO:0000313|EMBL:CDD73952.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L3_068_000M1_scaffold_247_5
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4842..5708)
DNA (867bp) protein (289aa)
Bacterial Ig-like domain (Group 2) n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9D7_9CLOT
Bacterial Ig-like domain (Group 2) {ECO:0000313|EMBL:CDD73953.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L3_068_000M1_scaffold_247_6
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5844..6398)
DNA (555bp) protein (185aa)
MerR family regulatory protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C711_9CLOT
MerR family regulatory protein {ECO:0000313|EMBL:CDD73954.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L3_068_000M1_scaffold_247_7
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6554..7903)
DNA (1350bp) protein (450aa)
Replicative DNA helicase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C7K8_9CLOT
Replicative DNA helicase {ECO:0000313|EMBL:CDD73955.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
replicative DNA helicase
L3_068_000M1_scaffold_247_8
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7906..8352)
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=1 Tax=Clostridium sp. CAG:62 RepID=R7C789_9CLOT
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
LSU ribosomal protein L9P
L3_068_000M1_scaffold_247_9
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8352..10406)
DNA (2055bp) protein (685aa)
Phosphoesterase RecJ domain protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C883_9CLOT
Phosphoesterase RecJ domain protein {ECO:0000313|EMBL:CDD73957.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
phosphoesterase domain-containing protein
L3_068_000M1_scaffold_247_10
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10555..11409
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9E3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD73958.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L3_068_000M1_scaffold_247_11
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11470..11733)
DNA (264bp) protein (88aa)
30S ribosomal protein S18 n=1 Tax=Clostridium sp. CAG:62 RepID=R7C7L3_9CLOT
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
rpsR; 30S ribosomal protein S18
L3_068_000M1_scaffold_247_12
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11775..12221)
DNA (447bp) protein (149aa)
Single-stranded DNA-binding protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C795_9CLOT
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
single-strand binding protein
L3_068_000M1_scaffold_247_13
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12240..12527)
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=1 Tax=Clostridium sp. CAG:62 RepID=R7C887_9CLOT
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
SSU ribosomal protein S6P
L3_068_000M1_scaffold_247_14
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12657..12830)
DNA (174bp) protein (58aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9E9_9CLOT
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDD73963.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L3_068_000M1_scaffold_247_15
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12871..13056)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C718_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD73964.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L3_068_000M1_scaffold_247_16
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13072..13515)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C7L7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD73965.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L3_068_000M1_scaffold_247_17
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13520..14998)
DNA (1479bp) protein (493aa)
xylulokinase (EC:2.7.1.17)
Xylulokinase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C7A0_9CLOT
Xylulokinase {ECO:0000313|EMBL:CDD73966.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L3_068_000M1_scaffold_247_18
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15104..16597)
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YJ83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35993.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L-fucose isomerase-like protein
L3_068_000M1_scaffold_247_19
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16732..17550)
DNA (819bp) protein (273aa)
Benzil reductase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9F3_9CLOT
Benzil reductase {ECO:0000313|EMBL:CDD73968.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
glyoxal reductase
L3_068_000M1_scaffold_247_20
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17591..18370)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C723_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD73969.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
AraC family transcriptional regulator
L3_068_000M1_scaffold_247_21
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18560..20488
DNA (1929bp) protein (643aa)
Glycoside hydrolase family 43 n=1 Tax=Clostridium sp. CAG:62 RepID=R7C7M1_9CLOT
Glycoside hydrolase family 43 {ECO:0000313|EMBL:CDD73970.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
carbohydrate-binding family 6 protein
L3_068_000M1_scaffold_247_22
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20680..21753
DNA (1074bp) protein (358aa)
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C7A4_9CLOT
6-phosphofructokinase 3 {ECO:0000313|EMBL:CDD73971.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L3_068_000M1_scaffold_247_23
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21769..23346
DNA (1578bp) protein (526aa)
DNA polymerase III, subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III subunits gamma and tau n=1 Tax=Clostridium sp. CAG:62 RepID=R7C898_9CLOT
DNA polymerase III subunits gamma and tau {ECO:0000313|EMBL:CDD73972.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L3_068_000M1_scaffold_247_24
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23377..23727
DNA (351bp) protein (117aa)
Nucleoid-associated protein BN737_00258 n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9F8_9CLOT
Nucleoid-associated protein BN737_00258 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L3_068_000M1_scaffold_247_25
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23727..24326
DNA (600bp) protein (200aa)
Recombination protein RecR n=1 Tax=Clostridium sp. CAG:62 RepID=R7C726_9CLOT
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
recombination protein RecR
L3_068_000M1_scaffold_247_26
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24291..24866)
DNA (576bp) protein (192aa)
Sporulation protein YyaC n=1 Tax=Clostridium sp. CAG:62 RepID=R7C7M6_9CLOT
Sporulation protein YyaC {ECO:0000313|EMBL:CDD73975.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
sporulation protein YyaC
L3_068_000M1_scaffold_247_27
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25079..26011
DNA (933bp) protein (311aa)
Peptidoglycan-binding LysM n=1 Tax=Clostridium sp. CAG:62 RepID=R7C7A8_9CLOT
Peptidoglycan-binding LysM {ECO:0000313|EMBL:CDD73976.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
peptidoglycan-binding LysM
L3_068_000M1_scaffold_247_28
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26088..27236
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C8A3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD73977.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L3_068_000M1_scaffold_247_29
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27250..27744
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9G2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD73978.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Colicin V production protein.
L3_068_000M1_scaffold_247_30
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


27907..28326
DNA (420bp) protein (140aa)
30S ribosomal protein S12 n=1 Tax=Clostridium sp. CAG:62 RepID=R7C730_9CLOT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
30S ribosomal protein S12
Displaying items 1-30 of 88 in total

View Taxonomy